PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG025910t1 | ||||||||
Common Name | TCM_025910 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MYB | ||||||||
Protein Properties | Length: 306aa MW: 34561.6 Da PI: 7.9509 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.7 | 5.6e-18 | 25 | 72 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell++++k+ G g+W+t +++ g+ R++k+c++rw +yl Thecc1EG025910t1 25 RGPWTPEEDELLANYIKREGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 72 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 48.4 | 2.2e-15 | 78 | 123 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Thecc1EG025910t1 78 RGRIAPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 123 678889****************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-22 | 16 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.204 | 20 | 72 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.8E-29 | 22 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-13 | 24 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-16 | 25 | 72 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.46E-11 | 27 | 72 | No hit | No description |
PROSITE profile | PS51294 | 24.578 | 73 | 127 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-24 | 75 | 128 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-14 | 77 | 125 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-14 | 79 | 123 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.51E-11 | 83 | 123 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0048354 | Biological Process | mucilage biosynthetic process involved in seed coat development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MRNPSLSGTS ATSKTPCCSK VGIKRGPWTP EEDELLANYI KREGEGRWRT LPKRAGLLRC 60 GKSCRLRWMN YLRPSVKRGR IAPDEEDLIL RLHRLLGNRW SLIAGRIPGR TDNEIKNYWN 120 THLSKKLISQ GIDPRTHKPL NPISHTSSQV NHDPVPKPNP IPPNFNSSQL EENTIAMTTK 180 TTTQDFTPTN LEYHQQYDQN QQVVDSTVNR RNPDGATLIV GQPSSLGNEG DYIENCNEDM 240 FSSFLDSLIN DNLFVNQQQP NNVVAAEAST QNFTHGNIWE AEIMSSMVAF GNEQNPFINH 300 HQHQP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-24 | 25 | 127 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007030073.2 | 0.0 | PREDICTED: transcription repressor MYB5 | ||||
Swissprot | Q38850 | 7e-82 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | A0A061EZP2 | 0.0 | A0A061EZP2_THECC; Myb domain protein 5, putative | ||||
STRING | EOY10575 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 5e-83 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG025910t1 |
Entrez Gene | 18599853 |
Publications ? help Back to Top | |||
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