PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Dof

Protein Properties

Length: 488aa MW: 52925.2 Da PI: 6.6527

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG025807t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.2	4.1e-39	94	153	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ Thecc1EG025807t1 94 PDKVLPCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHL 153 78999*****************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-30	82	151	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.1E-32	95	152	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	98	152	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	100	136	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MNGGDPAFKL FGRKIAVPEP QIHAGDTSSE ITNPETETSY TNTSGDPDKS ITVENDKEEH 60 QTSMKSNEIQ TNSKLKEEQS ETDSADQEKV FKKPDKVLPC PRCNSLDTKF CYFNNYNVNQ 120 PRHFCKNCQR YWTAGGTMRN VPIGAGRRKN KHLASQYRQI IVSSDGVPMT RIETPDSANQ 180 QLLPPGESTT AFRPSMGNGT VLKFGAEAPL CESMETVLSL GDQKRSVEMG TVSCGEIREE 240 PSSCGSSATP CSIPGNHLPG NVMQKERVGL AGPNEQITQH PPQCYPIPPW IFPWNPGMNN 300 VAPMAVGQSS SERIGALNSS TSNAVQWCPT PMMAVPGFCP PNVPLQFVPA YWGCMPLWAA 360 SGGNVSFSGS NGCLSPSSST SNSCCSGNGS PRLGKHSRET NFVEEQSEKC VLVPKTLRID 420 DPNEASRSPI WATLGIKPDQ KDPLRRGKIF NAFDSKAEGK DHLLDGSHIL EANPAALSRS 480 HTFQEST*

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MNGGDPAFKL FGRKIAVPEP QIHAGDTSSE ITNPETETSY TNTSGDPDKS ITVENDKEEH  60
QTSMKSNEIQ TNSKLKEEQS ETDSADQEKV FKKPDKVLPC PRCNSLDTKF CYFNNYNVNQ  120
PRHFCKNCQR YWTAGGTMRN VPIGAGRRKN KHLASQYRQI IVSSDGVPMT RIETPDSANQ  180
QLLPPGESTT AFRPSMGNGT VLKFGAEAPL CESMETVLSL GDQKRSVEMG TVSCGEIREE  240
PSSCGSSATP CSIPGNHLPG NVMQKERVGL AGPNEQITQH PPQCYPIPPW IFPWNPGMNN  300
VAPMAVGQSS SERIGALNSS TSNAVQWCPT PMMAVPGFCP PNVPLQFVPA YWGCMPLWAA  360
SGGNVSFSGS NGCLSPSSST SNSCCSGNGS PRLGKHSRET NFVEEQSEKC VLVPKTLRID  420
DPNEASRSPI WATLGIKPDQ KDPLRRGKIF NAFDSKAEGK DHLLDGSHIL EANPAALSRS  480
HTFQEST*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007029942.2	0.0	PREDICTED: cyclic dof factor 2 isoform X1
TrEMBL	A0A061F7F7	0.0	A0A061F7F7_THECC; Cycling DOF factor 2, putative isoform 1
STRING	EOY10444	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15591	10	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	4e-71	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Thecc1EG025807t1
Entrez Gene	18599777

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]