PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG025260t2
Common NameTCM_025260
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 412aa    MW: 45110.8 Da    PI: 8.7765
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG025260t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.4e-112147127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                      ++++ C+++ rtG C++G++C+F+H+p
  Thecc1EG025260t2 21 PGEPDCSYYIRTGLCRFGATCRFNHPP 47
                      5789*********************97 PP
2zf-CCCH38.91.4e-126892327
                      S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                      +++C+++++tGtCk+G++CkF+H++
  Thecc1EG025260t2 68 QPECQYYLKTGTCKFGATCKFHHPR 92
                      799********************96 PP
3zf-CCCH382.8e-12114138327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C +++rtG+Ck+G++CkF+H++
  Thecc1EG025260t2 114 EPECAYYLRTGQCKFGSTCKFHHPQ 138
                       799********************97 PP
4zf-CCCH36.39.5e-12272298127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +++++C+f+++tG Ck+G  C+F+H++
  Thecc1EG025260t2 272 PGQPECQFYMKTGDCKFGTVCRFHHPR 298
                       5789*********************96 PP
5zf-CCCH40.83.5e-13318344127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++lC f++r+G+Ck+G++CkF+H++
  Thecc1EG025260t2 318 PGEPLCIFYSRYGICKFGPSCKFNHPM 344
                       589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5872048IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-52047IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-82247IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-52548IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-42646IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-56592IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.4136593IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-106892IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-66994IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-57192IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-6111138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817111139IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-10114138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6114139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4117137IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5271298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.399271299IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-8273298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-5275300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4277299IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-7317344IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.727317345IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-10319344IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-5320344IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4322342IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MWQMNLRSSE TMESGPYPER PGEPDCSYYI RTGLCRFGAT CRFNHPPNRK LAIAAARMKG  60
EFPERAGQPE CQYYLKTGTC KFGATCKFHH PRDKAGIAGR VSLNILGYPL RPNEPECAYY  120
LRTGQCKFGS TCKFHHPQPT NMMVSVRGSP IYQTVPSPTT PGQQSYAGGI TNWSRASFIP  180
SPRWQGPSSY APLILPQGVV SVPGWNAYSG QLASVSSSEN LLQTNGNNQY GTTHQNESAT  240
AGSQASFSQF RSGSVPVGFY ALQRENVFPE RPGQPECQFY MKTGDCKFGT VCRFHHPRER  300
VLPAPDCVLS PIGLPLRPGE PLCIFYSRYG ICKFGPSCKF NHPMGIFTYN YSTSSPSDAP  360
VHRLLGSSSG TAGLNLSSEG LVEAGSTKTR RLSLSENRQL SSSDDNIDTE G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007029391.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A061EZ030.0A0A061EZ03_THECC; Zinc finger CCCH domain-containing protein 33 isoform 1
STRINGEOY098930.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]