PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG025260t1
Common NameTCM_025260
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 452aa    MW: 49030.1 Da    PI: 8.5111
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG025260t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.51.6e-116187127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                      ++++ C+++ rtG C++G++C+F+H+p
  Thecc1EG025260t1 61 PGEPDCSYYIRTGLCRFGATCRFNHPP 87
                      5789*********************97 PP
2zf-CCCH38.81.6e-12108132327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C+++++tGtCk+G++CkF+H++
  Thecc1EG025260t1 108 QPECQYYLKTGTCKFGATCKFHHPR 132
                       799********************96 PP
3zf-CCCH37.83.1e-12154178327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C +++rtG+Ck+G++CkF+H++
  Thecc1EG025260t1 154 EPECAYYLRTGQCKFGSTCKFHHPQ 178
                       799********************97 PP
4zf-CCCH36.11.1e-11312338127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +++++C+f+++tG Ck+G  C+F+H++
  Thecc1EG025260t1 312 PGQPECQFYMKTGDCKFGTVCRFHHPR 338
                       5789*********************96 PP
5zf-CCCH40.74e-13358384127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++lC f++r+G+Ck+G++CkF+H++
  Thecc1EG025260t1 358 PGEPLCIFYSRYGICKFGPSCKFNHPM 384
                       589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-56087IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5876088IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-86287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-56588IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-46686IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5105132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413105133IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-10108132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6109134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-5111132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817151179IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-6151178IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-10154178IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6154179IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4157177IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5311338IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.399311339IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-8313338IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5315340IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4317339IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.727357385IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-7357384IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10359384IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-5360384IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-4362382IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MEFSFDAGIP MPRTAAAVAA AAAVAVTEGT SLSPSLNQDA MWQMNLRSSE TMESGPYPER  60
PGEPDCSYYI RTGLCRFGAT CRFNHPPNRK LAIAAARMKG EFPERAGQPE CQYYLKTGTC  120
KFGATCKFHH PRDKAGIAGR VSLNILGYPL RPNEPECAYY LRTGQCKFGS TCKFHHPQPT  180
NMMVSVRGSP IYQTVPSPTT PGQQSYAGGI TNWSRASFIP SPRWQGPSSY APLILPQGVV  240
SVPGWNAYSG QLASVSSSEN LLQTNGNNQY GTTHQNESAT AGSQASFSQF RSGSVPVGFY  300
ALQRENVFPE RPGQPECQFY MKTGDCKFGT VCRFHHPRER VLPAPDCVLS PIGLPLRPGE  360
PLCIFYSRYG ICKFGPSCKF NHPMGIFTYN YSTSSPSDAP VHRLLGSSSG TAGLNLSSEG  420
LVEAGSTKTR RLSLSENRQL SSSDDNIDTE G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007029391.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A061EZ030.0A0A061EZ03_THECC; Zinc finger CCCH domain-containing protein 33 isoform 1
STRINGEOY098930.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]