PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG025248t1 | ||||||||
Common Name | TCM_025248 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | WRKY | ||||||||
Protein Properties | Length: 757aa MW: 81637.6 Da PI: 6.2428 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.8 | 4.7e-33 | 269 | 326 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers d++++ei+Y+g Hnh+k Thecc1EG025248t1 269 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSL-DGQITEIIYKGAHNHPK 326 7****************************************.***************85 PP | |||||||
2 | WRKY | 101.4 | 5.3e-32 | 488 | 546 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver++++ k+v +tY g+Hnhe Thecc1EG025248t1 488 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTPGCPVRKHVERASHNLKCVLTTYDGKHNHE 546 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.9E-29 | 262 | 327 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.1E-26 | 266 | 327 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-37 | 268 | 326 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-25 | 269 | 325 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.445 | 269 | 327 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.8E-35 | 473 | 548 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-27 | 481 | 548 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 36.747 | 483 | 548 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.9E-36 | 488 | 547 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.9E-24 | 489 | 546 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 757 aa Download sequence Send to blast |
MDHNVTVFTN RQESVTADDD DDDSKTADYG GGAGGGGGFG KRGGSIAERR AATCGFKAER 60 ISTARFRAST SPLASPSARS PYLTIPPGIS PTALLDSPIM LPNAQVSPTT GTFPVPFLNH 120 DSQVLNPSNG DRGSNIVSSF TFKPQNLDSQ PSFSSLEDQV SSSFNLVQSA EVHCQRLAKL 180 EPPLDFEFPA EFSKKASSMN SAAVSVADVK VLNDIVNDNA NLGFHPSELA SDEMPMPKEP 240 LLGQDVNTHL SEGDQKGINT AMGMARTSED GYNWRKYGQK QVKGSEYPRS YYKCTHPNCQ 300 VKKKVERSLD GQITEIIYKG AHNHPKPLPC RRPSIGSTLS SDEMSEIAEG GGTCVKVEGG 360 LIWRNAQAGS RDIKLGSDWR ADGLERTSST SVVTDLSDPL STAQGKSFGA FELAETPEFS 420 STLASHDDDN DDRATQGSIS LCDDAANDDE SESKRRKTES CLTEMNATSG ALREPRVVVQ 480 IESDVDILDD GYRWRKYGQK VVKGNPNPRS YYKCTTPGCP VRKHVERASH NLKCVLTTYD 540 GKHNHEVPAA RSSSHVNSSG CNLPPTVPNT QAALALARNT NALKPETPIQ DIVPPFDQKP 600 EFKNEYLRPS FLRDFSNEMK LGAASLASVY QMKFPSIQNT IPYGSFGVNP NCIAAHQSGS 660 LASTVPNFPM SLPLNHPTSA NLSLAGFDIN NGGKSTGPTH SFLPGQQLKE STTRFLGIKQ 720 EVKDDNLYNP CLPIVDHASA SSLSSVFQQA NGNFPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-34 | 257 | 549 | 1 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 6e-34 | 257 | 549 | 1 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY331171 | 0.0 | AY331171.2 Theobroma cacao WRKY 11 (tcw11) gene, tcw11-1 allele, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017976834.1 | 0.0 | PREDICTED: probable WRKY transcription factor 2 | ||||
TrEMBL | A0A061EYY8 | 0.0 | A0A061EYY8_THECC; WRKY DNA-binding protein 2, putative isoform 1 | ||||
STRING | EOY09878 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17370 | 6 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 1e-110 | WRKY DNA-binding protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG025248t1 |
Entrez Gene | 18599371 |
Publications ? help Back to Top | |||
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