PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

HD-ZIP

Protein Properties

Length: 360aa MW: 39238.8 Da PI: 8.369

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG024940t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.9	1.4e-17	177	231	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Thecc1EG024940t1 177 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 231 778899***********************************************98 PP
2	HD-ZIP_I/II	127.8	4.6e-41	177	267	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk Thecc1EG024940t1 177 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 267 69*************************************************************************************9.555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	4.1E-8	70	139	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	7.4E-18	159	234	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.91E-18	168	234	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.216	173	233	IPR001356	Homeobox domain
SMART	SM00389	7.3E-16	175	237	IPR001356	Homeobox domain
Pfam	PF00046	4.7E-15	177	231	IPR001356	Homeobox domain
CDD	cd00086	1.55E-15	177	234	No hit	No description
PROSITE pattern	PS00027	0	208	231	IPR017970	Homeobox, conserved site
Pfam	PF02183	7.4E-11	233	267	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	4.5E-26	233	276	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MELALSLGDP SKPFSFLDKA PKLSSKDLGF CMGLGNGFRS QEKGDAFEGE SRGEATRDGH 60 DKRVSSDPPL QLDLLPFSPV PRSQPPSQLR FPWLTDNQTG SSEGQGRGLD VNRLPVVAVM 120 DEAEDGAAMS SPNSAVSSFQ MDFGIRNGSG RGKRDLEVEN ERASSRASDD DENGSTRKKL 180 RLSKEQSAFL EESFKEHNTL NPKQKLALAK QLNLRPRQVE VWFQNRRART KLKQTEVDCE 240 YLKRCCETLT EENRRLQKEL QELRALKTSQ PFYMQLPATT LTMCPSCERV ATTSTTANST 300 AAAATTTTNG SAAAAAAGSN SDAKTGVLPL TKTRGYPFSP LPTHVTQSQP QPQAHQAAS*

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MELALSLGDP SKPFSFLDKA PKLSSKDLGF CMGLGNGFRS QEKGDAFEGE SRGEATRDGH  60
DKRVSSDPPL QLDLLPFSPV PRSQPPSQLR FPWLTDNQTG SSEGQGRGLD VNRLPVVAVM  120
DEAEDGAAMS SPNSAVSSFQ MDFGIRNGSG RGKRDLEVEN ERASSRASDD DENGSTRKKL  180
RLSKEQSAFL EESFKEHNTL NPKQKLALAK QLNLRPRQVE VWFQNRRART KLKQTEVDCE  240
YLKRCCETLT EENRRLQKEL QELRALKTSQ PFYMQLPATT LTMCPSCERV ATTSTTANST  300
AAAATTTTNG SAAAAAAGSN SDAKTGVLPL TKTRGYPFSP LPTHVTQSQP QPQAHQAAS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	175	181	TRKKLRL
2	225	233	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017977138.1	0.0	PREDICTED: homeobox-leucine zipper protein HOX11
Swissprot	P46665	1e-106	HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBL	A0A061F4R6	0.0	A0A061F4R6_THECC; Homeobox from
STRING	EOY09524	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4928	28	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	6e-87	homeobox from Arabidopsis thaliana

Link Out ? help Back to Top
Phytozome	Thecc1EG024940t1
Entrez Gene	18599131

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]