PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG024899t2
Common NameTCM_024899
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 224aa    MW: 23122.3 Da    PI: 9.7218
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG024899t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.65.1e-092852226
                      -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                      kt+lC+ f+    Ck+Gd+C+FaHg
  Thecc1EG024899t2 28 KTRLCNKFSSAEGCKFGDKCHFAHG 52
                      8***********************9 PP
2zf-CCCH39.21.1e-12190214126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       ykt+lC++fa+ G C +G+rC+FaHg
  Thecc1EG024899t2 190 YKTKLCDNFAK-GSCTFGERCHFAHG 214
                       9**********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.1E-142457IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-42653IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-82657IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.462654IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-62852IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.19E-1587167IPR004088K Homology domain, type 1
SMARTSM003224.4E-1295165IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.108.1E-1795165IPR004088K Homology domain, type 1
PROSITE profilePS5008414.48796160IPR004088K Homology domain, type 1
CDDcd001051.14E-1498160No hitNo description
PfamPF000138.0E-1298162IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.9E-16185220IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-9188219IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-8189215IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.793189216IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-10190214IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MNLAPAVPPA SRNMAAPPPI PNGSSAVKTR LCNKFSSAEG CKFGDKCHFA HGDWELGKPI  60
APSHDDPRGM ATIAGRMGSR MEPPPPSGPA ASFGASATAK ISVDASLAGA IIGKGGVHSK  120
QICRRTGAKL SIREHESDPT LRNIELEGSF EQIKQASAMV RELISSLGPV SGPAKTPGVP  180
GGQGHPGSNY KTKLCDNFAK GSCTFGERCH FAHGTAELRK SAV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007028981.11e-161PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ69XQ37e-79C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A061F4M51e-161A0A061F4M5_THECC; KH domain-containing protein / zinc finger family protein isoform 2
STRINGEOY094831e-161(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.16e-65C3H family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]