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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG024873t1 | ||||||||
Common Name | TCM_024873 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | SBP | ||||||||
Protein Properties | Length: 389aa MW: 40816 Da PI: 9.6321 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 138.8 | 1.6e-43 | 89 | 164 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC++dls+ak y++rhkvC +hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+ Thecc1EG024873t1 89 RCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPKVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 164 6*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.8E-35 | 83 | 151 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.505 | 87 | 164 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.4E-41 | 88 | 168 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.0E-32 | 90 | 163 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:2000025 | Biological Process | regulation of leaf formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MEMGSGSLTE SGGSSTNSST ESLNGLKFGK KIYFEDAAAG APAAAAAASA AGGGAVGTPP 60 KSGPGSSSLS GSGRKARGGG VVQGAQPPRC QVEGCKVDLS DAKAYYSRHK VCGMHSKSPK 120 VIVAGLEQRF CQQCSRFHQL PEFDQGKRSC RRRLAGHNER RRKPPPGSLL PSRYGRLSSS 180 IVESSRGGSF IMDFTAYPRL SGRDAWPTAR SSERVPGNQN TATGRSLPHP WQNNSENPPH 240 DLFLQGSPGG TGLSSAGIPS GECFTGVADS SCALSLLSNQ PWGSRNRASS LGVNDMMNTE 300 GSSVAQPTTP NGATVNPYSN ASWGFKGNDS GSSSHELPPH LGLGQISEPV NNQFSGGLDL 360 SQQSRRQFME LEQSRGYDTS TQHIHWSR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 9e-32 | 90 | 163 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00307 | DAP | Transfer from AT2G42200 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017977243.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 9 | ||||
TrEMBL | A0A061EXC5 | 0.0 | A0A061EXC5_THECC; Promoter-binding protein SPL9 | ||||
STRING | EOY09456 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2144 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 4e-68 | squamosa promoter binding protein-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG024873t1 |
Entrez Gene | 18599080 |
Publications ? help Back to Top | |||
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