PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG024828t1
Common NameTCM_024828
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 360aa    MW: 39749.3 Da    PI: 5.9069
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG024828t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.3e-08203250455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  Thecc1EG024828t1 203 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 250
                       8*************************9....888999999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-15197268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.04E-8197254No hitNo description
Gene3DG3DSA:4.10.280.101.0E-14199267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.519199249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-6203250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-8205255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEPKARTTET RSNGTTSDGD EAVALESLQF TDEIHRLISA PSTDNASSFT ALLELPAPQA  60
VELLHSPESA KLIAAPAPNV EDIKGSFHFP SNTGLIERAA RFSVFAGDSN NNNNKTGSAE  120
TTSNNSSQNP QKEVKSEPAE TESCQPLVSD PTVEKRSIKR KDREKKVKGS TKKSKTAANE  180
SSEDAEKLPY VHVRARRGQA TDSHSLAERA RREKINARMK LLQELVPGCN KISGTALVLD  240
EIINHVQSLQ RQVEFLSMRL AAVNPRIDFN LDSIFTAESG SLMDGNFPSM VMPLMWPEVQ  300
VNGNRQQYQQ QWHFDAIQQP IWVREEVCNN YITPENSLLS YDSSANSATL HSNQVKMEL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007028901.20.0PREDICTED: transcription factor bHLH48 isoform X1
SwissprotQ3EAI11e-98BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A061EXK60.0A0A061EXK6_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
STRINGEOY094030.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25762771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-107bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]