PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C2H2

Protein Properties

Length: 362aa MW: 40502 Da PI: 6.6153

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG024788t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	284	306	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ Thecc1EG024788t1 284 FMCRKCGKAFAVRGDWRTHEKNC 306 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.64	200	227	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	7.4E-6	200	219	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.58	200	222	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	202	222	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.7E-6	266	304	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.0E-5	280	304	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.808	284	304	IPR007087	Zinc finger, C2H2
SMART	SM00355	49	284	304	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009860	Biological Process	pollen tube growth
GO:0010500	Biological Process	transmitting tissue development
GO:1990058	Biological Process	fruit replum development
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MADYPYSNFF SGWFKFNPLQ HYPPPNPPPQ QPSSYTQNYF YSSNTTFMTN ETNPFFHYQT 60 SSSSPPSPPV REALPLLSLS PTRHDKDEEV QDDEDQDQEH SCTAMDVDKS KGKEEGRLLF 120 TNSAGGASAS AAEDETVTVA LHIGLPSPSA SELASVLSSS SEITDKDGDG DDSGYPVNRL 180 NKGQYWIPTP SQILIGPTQF SCPVCCKTFN RYNNMQMHMW GHGSQYRKGP ESLRGTQPTG 240 MLRLPCYCCA PGCRNNIDHP RAKPLKDFRT LQTHYKRKHG IKPFMCRKCG KAFAVRGDWR 300 THEKNCGKLW YCICGSDFKH KRSLKDHIKA FGNGHAAYGI DGLEEDDEPA SEVEQDNESM 360 Q*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MADYPYSNFF SGWFKFNPLQ HYPPPNPPPQ QPSSYTQNYF YSSNTTFMTN ETNPFFHYQT  60
SSSSPPSPPV REALPLLSLS PTRHDKDEEV QDDEDQDQEH SCTAMDVDKS KGKEEGRLLF  120
TNSAGGASAS AAEDETVTVA LHIGLPSPSA SELASVLSSS SEITDKDGDG DDSGYPVNRL  180
NKGQYWIPTP SQILIGPTQF SCPVCCKTFN RYNNMQMHMW GHGSQYRKGP ESLRGTQPTG  240
MLRLPCYCCA PGCRNNIDHP RAKPLKDFRT LQTHYKRKHG IKPFMCRKCG KAFAVRGDWR  300
THEKNCGKLW YCICGSDFKH KRSLKDHIKA FGNGHAAYGI DGLEEDDEPA SEVEQDNESM  360
Q*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM485732	1e-149	AM485732.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X068454.12, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007028866.1	0.0	PREDICTED: zinc finger protein WIP2
Swissprot	Q9SVY1	1e-151	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A061EXH2	0.0	A0A061EXH2_THECC; C2H2-type zinc finger family protein
STRING	EOY09368	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-136	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG024788t1
Entrez Gene	18599023

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]