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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG024554t2 | ||||||||
Common Name | TCM_024554 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | AP2 | ||||||||
Protein Properties | Length: 422aa MW: 46488.7 Da PI: 8.2398 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.1 | 3.8e-17 | 64 | 123 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ k+ k+++lg ++ +e Aa+a++ a++k++g Thecc1EG024554t2 64 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 123 57*******************766644468557*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.45E-17 | 64 | 132 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.3E-13 | 64 | 123 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.126 | 65 | 131 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-15 | 65 | 132 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-25 | 65 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-5 | 66 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-5 | 113 | 133 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MASTSSSDPG MKAEASGGEN SETVIANDQL LLYRGLKKAK KERGCTAKER ISKMPPCTAG 60 KRSSIYRGVT RHRWTGRYEA HLWDKSTWNQ NQNKKGKQVY LGAYDDEEAA ARAYDLAALK 120 YWGPGTLINF PVTDYTRDLE EMQNVSREDY LASLRRKSSG FSRGISKYRG LSSSRWDSSF 180 GRVSGSEYFN SMQYSDDPAT ESDYIGGFCI ERKIDLTGCI KWWGTNKTCQ AEPGAKSSEE 240 AKHACPEDIG SELKTSEWAV QPTEPYQMPC LGTSLEGTKR KGSSASALSI LSRSADFKSL 300 QERAVKKQEN NADNDENENK NTINKMDHGK AAEKSVNHDT GSDRLGATLG MSAGLSLQKN 360 VFPLTPFLSA PLLTNYNTID SLVDPVLWTS LVPVLPTGPS RNPEASKTET SSTYTFFRPE 420 G* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007028653.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X1 | ||||
Swissprot | Q8GWK2 | 1e-170 | AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710 | ||||
TrEMBL | A0A061EVT2 | 0.0 | A0A061EVT2_THECC; AP2 domain-containing transcription factor isoform 2 | ||||
STRING | EOY09155 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10815 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41710.1 | 1e-158 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG024554t2 |
Entrez Gene | 18598873 |
Publications ? help Back to Top | |||
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