PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG024315t1
Common NameTCM_024315
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 234aa    MW: 26897.7 Da    PI: 7.4606
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG024315t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.13.7e-1463115155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ++ +hn+rEr RR++iNs +  Lr+llP +  ++ k+ls  ++  ++ +YI +Lq
  Thecc1EG024315t1  63 KKLNHNARERDRRKKINSLYTSLRSLLPLS--EQTKRLSIPATISRVLKYIPELQ 115
                       6789*************************7..36666***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.45662114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-1563134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-1163115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.30E-1263119No hitNo description
Gene3DG3DSA:4.10.280.105.2E-1263134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-968120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MCALTPFPVC EWPLDSPINH IEQISYTEIF EDLLRFTSTL PPIQLDRSPS CSGDSGNNPI  60
VLKKLNHNAR ERDRRKKINS LYTSLRSLLP LSEQTKRLSI PATISRVLKY IPELQAHVER  120
LVQKKEEILS RQEEFSCDQE NKRKGSSSFA ISVSRVSERE VVVQISTFRA FETPLSHVLF  180
NLEEDGLFLT EASCFESFGG RVFYNLHFQV ERTYNLEGVV LNEKLLSLYE KRK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007028476.11e-170PREDICTED: transcription factor ORG2 isoform X1
TrEMBLA0A061EWD91e-169A0A061EWD9_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
STRINGEOY089781e-169(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48228153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.12e-48bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]