PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG022993t1
Common NameTCM_022993
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family M-type_MADS
Protein Properties Length: 357aa    MW: 40637.6 Da    PI: 10.0753
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG022993t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.26.7e-161151343
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                      i n+s r  ++ kRr g+lKK +EL +LCd++++vii+s++
  Thecc1EG022993t1 11 ITNDSTRRASLKKRRLGLLKKVSELTTLCDVNACVIIYSPD 51
                      89*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.638149IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-21160IPR002100Transcription factor, MADS-box
CDDcd002668.69E-27285No hitNo description
SuperFamilySSF554558.37E-22294IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-7323IPR002100Transcription factor, MADS-box
PfamPF003195.7E-151151IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MTRKKVKLAW ITNDSTRRAS LKKRRLGLLK KVSELTTLCD VNACVIIYSP DEIEPKVWPS  60
HNVVKQQLIW FRSIPELNRQ KKMMNQETYL KGKVTKVQEQ LTKLERRNKD VEMAHLTHQI  120
NQGKRLDELN LSELRGLTWL VEENMKEIKK RIEFLERALF APTYAPHHPH LPFPPQSHTM  180
NETARIGSGS VDHGRDERTP IEPLLWDQRF IDMMNNNELK SAGCISIRSD MVILYRSFAK  240
SATDDLKLPR HSFGGSSSAA VDMGLPLTSF RPHGAGAGAD DMWLPHECRI GGSKFGPFGN  300
EIELGPYLFR GHIRSSFFET ELRLPPFKRY GGSSSDAGSD FRLPFNGKTW ANNLSP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAWITNDSTRRASLKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017976411.10.0PREDICTED: uncharacterized protein LOC18598427
TrEMBLA0A061F1W30.0A0A061F1W3_THECC; AGAMOUS-like 48, putative
STRINGEOY085090.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.17e-34AGAMOUS-like 80
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]