PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG022490t2
Common NameTCM_022490
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GRF
Protein Properties Length: 402aa    MW: 43708.7 Da    PI: 8.7057
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG022490t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC81.85.9e-26149192144
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                       d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e
  Thecc1EG022490t2 149 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVE 192
                       79***************************************997 PP
2QLQ53.57.5e-1977113137
               QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                       s+F+ aQ+q+L+ Q+l+y+y++a++ vPpeLlq+i+k
  Thecc1EG022490t2  77 SYFSLAQWQELELQALIYRYMLAGATVPPELLQPIKK 113
                       79*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.2E-1177113IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.91478113IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.1E-1378111IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.755149193IPR014977WRC domain
PfamPF088792.4E-22150192IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MDLHLKQWRN QHESEQQPSA KIPKLLLDPH HQHQQQQQQH PSESSALPLF VPEPNSKISS  60
NLSAVPDSTT RFPRMGSYFS LAQWQELELQ ALIYRYMLAG ATVPPELLQP IKKSLLHSPA  120
YFLHHPLQHY SHYQPALLQS GYWGRAAMDP EPGRCRRTDG KKWRCSRDVV AGQKYCERHM  180
HRGRNRSRKP VEMPTSSTTA NNNATAAFGG ASGAGVGAIG CGALKVTSPI PASPLAVVAN  240
GTNNFGLSGP SPPIDLLHLN HSSSESKNEH KGLFEAQNEV NNRSDGHILR PFFDDWPRSQ  300
QDPDNTGTSA SPMSSATCLS ISMPGNSSSD VSLKLSTGNV DQLGPRDSER NWAAGWATNQ  360
VASMGGPLAE ALRSSTSNSS PTSVLQQLPR GSASETSYVN T*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007027646.20.0PREDICTED: growth-regulating factor 3 isoform X3
SwissprotQ8L8A72e-97GRF4_ARATH; Growth-regulating factor 4
TrEMBLA0A061EU430.0A0A061EU43_THECC; Growth-regulating factor 3 isoform 2
STRINGEOY081480.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19262667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.15e-86growth-regulating factor 4
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  3. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]