PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Trihelix

Protein Properties

Length: 475aa MW: 53768.8 Da PI: 6.1537

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG022395t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	77.6	2e-24	104	203	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 +Wt+++v++Li a+ +++++ +++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +++ +++++++ Thecc1EG022395t2 104 KWTDSMVRLLIMAVYYIGDEAGSEGndpagkkkaggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGRGtACKVVENQ 196 7************99888876433677788999999******************************************559** PP trihelix 80 pyfdqle 86 +++d ++ Thecc1EG022395t2 197 SLLDTMD 203 *9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.7E-22	102	228	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010629	Biological Process	negative regulation of gene expression
GO:1900037	Biological Process	regulation of cellular response to hypoxia
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MVVSSLLGML GLEMPLHPQQ QQQQPQNPQS AQNPHQLHHH PQMVAYSLHE TDHSQHQQSV 60 KQGYPFASKT KQLSPLSDED EPGFTPDDGA ADAKRKISPW QRMKWTDSMV RLLIMAVYYI 120 GDEAGSEGND PAGKKKAGGL LQKKGKWKSV SRAMMEKGFY VSPQQCEDKF NDLNKRYKRV 180 NDILGRGTAC KVVENQSLLD TMDLSPKMKE EVRKLLNSKH LFFREMCAYH NSCGHGATAG 240 ASGANHSPEV ATETSQIQHQ QAQQQRCLHS SDTAQIAGNS GGMDPEALKL TKVGSDEEDD 300 DDDDDSDDDE DEDDEEAMDG HSRGHNGHGQ EDDEDNDEKS TRKRPRKGAL AMSLSPLMQQ 360 LSCEAVNVIQ DGSKSVWEKH WMKMRLMQLE EQQVSYQYQA FELEKQRLKW VKFSGKKERE 420 MEKAKLENER RRLENERMVL LVRQKELELV DLQHQHQPQQ HSSSKRGDPS SITG*

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MVVSSLLGML GLEMPLHPQQ QQQQPQNPQS AQNPHQLHHH PQMVAYSLHE TDHSQHQQSV  60
KQGYPFASKT KQLSPLSDED EPGFTPDDGA ADAKRKISPW QRMKWTDSMV RLLIMAVYYI  120
GDEAGSEGND PAGKKKAGGL LQKKGKWKSV SRAMMEKGFY VSPQQCEDKF NDLNKRYKRV  180
NDILGRGTAC KVVENQSLLD TMDLSPKMKE EVRKLLNSKH LFFREMCAYH NSCGHGATAG  240
ASGANHSPEV ATETSQIQHQ QAQQQRCLHS SDTAQIAGNS GGMDPEALKL TKVGSDEEDD  300
DDDDDSDDDE DEDDEEAMDG HSRGHNGHGQ EDDEDNDEKS TRKRPRKGAL AMSLSPLMQQ  360
LSCEAVNVIQ DGSKSVWEKH WMKMRLMQLE EQQVSYQYQA FELEKQRLKW VKFSGKKERE  420
MEKAKLENER RRLENERMVL LVRQKELELV DLQHQHQPQQ HSSSKRGDPS SITG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007027577.2	0.0	PREDICTED: transcriptional regulator EFH1 isoform X1
Refseq	XP_017977030.1	0.0	PREDICTED: transcriptional regulator EFH1 isoform X2
TrEMBL	A0A061F0P1	0.0	A0A061F0P1_THECC; Sequence-specific DNA binding transcription factors isoform 1
STRING	EOY08079	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	3e-86	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Thecc1EG022395t2
Entrez Gene	18598131

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]