PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG022395t2
Common NameTCM_022395
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family Trihelix
Protein Properties Length: 475aa    MW: 53768.8 Da    PI: 6.1537
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG022395t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.62e-24104203186
          trihelix   1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 
                       +Wt+++v++Li a+ +++++ +++              +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +++ +++++++ 
  Thecc1EG022395t2 104 KWTDSMVRLLIMAVYYIGDEAGSEGndpagkkkaggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGRGtACKVVENQ 196
                       7**************99888876433677788999999**********************************************559****** PP

          trihelix  80 pyfdqle 86 
                       +++d ++
  Thecc1EG022395t2 197 SLLDTMD 203
                       ***9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-22102228No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MVVSSLLGML GLEMPLHPQQ QQQQPQNPQS AQNPHQLHHH PQMVAYSLHE TDHSQHQQSV  60
KQGYPFASKT KQLSPLSDED EPGFTPDDGA ADAKRKISPW QRMKWTDSMV RLLIMAVYYI  120
GDEAGSEGND PAGKKKAGGL LQKKGKWKSV SRAMMEKGFY VSPQQCEDKF NDLNKRYKRV  180
NDILGRGTAC KVVENQSLLD TMDLSPKMKE EVRKLLNSKH LFFREMCAYH NSCGHGATAG  240
ASGANHSPEV ATETSQIQHQ QAQQQRCLHS SDTAQIAGNS GGMDPEALKL TKVGSDEEDD  300
DDDDDSDDDE DEDDEEAMDG HSRGHNGHGQ EDDEDNDEKS TRKRPRKGAL AMSLSPLMQQ  360
LSCEAVNVIQ DGSKSVWEKH WMKMRLMQLE EQQVSYQYQA FELEKQRLKW VKFSGKKERE  420
MEKAKLENER RRLENERMVL LVRQKELELV DLQHQHQPQQ HSSSKRGDPS SITG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007027577.20.0PREDICTED: transcriptional regulator EFH1 isoform X1
RefseqXP_017977030.10.0PREDICTED: transcriptional regulator EFH1 isoform X2
TrEMBLA0A061F0P10.0A0A061F0P1_THECC; Sequence-specific DNA binding transcription factors isoform 1
STRINGEOY080790.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.13e-86sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]