PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Trihelix

Protein Properties

Length: 538aa MW: 61200.5 Da PI: 6.6937

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG022395t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	77.3	2.4e-24	167	266	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 +Wt+++v++Li a+ +++++ +++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +++ +++++++ Thecc1EG022395t1 167 KWTDSMVRLLIMAVYYIGDEAGSEGndpagkkkaggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGRGtACKVVENQ 259 7************99888876433677788999999******************************************559** PP trihelix 80 pyfdqle 86 +++d ++ Thecc1EG022395t1 260 SLLDTMD 266 *9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.2E-22	165	291	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010629	Biological Process	negative regulation of gene expression
GO:1900037	Biological Process	regulation of cellular response to hypoxia
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence Send to blast
MFSISLNLLR SNSLHLSFLS AHIVVFFCYI IENLKERALT AFFSGYRRRR RRSFQVPGDC 60 YNSMVVSSLL GMLGLEMPLH PQQQQQQPQN PQSAQNPHQL HHHPQMVAYS LHETDHSQHQ 120 QSVKQGYPFA SKTKQLSPLS DEDEPGFTPD DGAADAKRKI SPWQRMKWTD SMVRLLIMAV 180 YYIGDEAGSE GNDPAGKKKA GGLLQKKGKW KSVSRAMMEK GFYVSPQQCE DKFNDLNKRY 240 KRVNDILGRG TACKVVENQS LLDTMDLSPK MKEEVRKLLN SKHLFFREMC AYHNSCGHGA 300 TAGASGANHS PEVATETSQI QHQQAQQQRC LHSSDTAQIA GNSGGMDPEA LKLTKVGSDE 360 EDDDDDDDSD DDEDEDDEEA MDGHSRGHNG HGQEDDEDND EKSTRKRPRK GALAMSLSPL 420 MQQLSCEAVN VIQDGSKSVW EKHWMKMRLM QLEEQQVSYQ YQAFELEKQR LKWVKFSGKK 480 EREMEKAKLE NERRRLENER MVLLVRQKEL ELVDLQHQHQ PQQHSSSKRG DPSSITG*

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence Send to blast

MFSISLNLLR SNSLHLSFLS AHIVVFFCYI IENLKERALT AFFSGYRRRR RRSFQVPGDC  60
YNSMVVSSLL GMLGLEMPLH PQQQQQQPQN PQSAQNPHQL HHHPQMVAYS LHETDHSQHQ  120
QSVKQGYPFA SKTKQLSPLS DEDEPGFTPD DGAADAKRKI SPWQRMKWTD SMVRLLIMAV  180
YYIGDEAGSE GNDPAGKKKA GGLLQKKGKW KSVSRAMMEK GFYVSPQQCE DKFNDLNKRY  240
KRVNDILGRG TACKVVENQS LLDTMDLSPK MKEEVRKLLN SKHLFFREMC AYHNSCGHGA  300
TAGASGANHS PEVATETSQI QHQQAQQQRC LHSSDTAQIA GNSGGMDPEA LKLTKVGSDE  360
EDDDDDDDSD DDEDEDDEEA MDGHSRGHNG HGQEDDEDND EKSTRKRPRK GALAMSLSPL  420
MQQLSCEAVN VIQDGSKSVW EKHWMKMRLM QLEEQQVSYQ YQAFELEKQR LKWVKFSGKK  480
EREMEKAKLE NERRRLENER MVLLVRQKEL ELVDLQHQHQ PQQHSSSKRG DPSSITG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	46	51	RRRRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007027577.2	0.0	PREDICTED: transcriptional regulator EFH1 isoform X1
TrEMBL	A0A061F0P1	0.0	A0A061F0P1_THECC; Sequence-specific DNA binding transcription factors isoform 1
STRING	EOY08079	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6762	27	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	2e-85	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Thecc1EG022395t1
Entrez Gene	18598131

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]