PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG022197t1 | ||||||||
Common Name | TCM_022197 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | TCP | ||||||||
Protein Properties | Length: 215aa MW: 23188.1 Da PI: 7.0543 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.9 | 9.1e-35 | 48 | 116 | 8 | 73 |
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa...sec 73 ++++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl+qa+p+i+++tg+++ +a +c Thecc1EG022197t1 48 SKDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGSGTVPAaheISC 116 79********************************************************66555332333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.3E-29 | 48 | 113 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.853 | 48 | 102 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MGSEMALHKF STANHNHQNS NINSVVSDES TPKTQLALPT RKPVSSLSKD RHTKVNGRGR 60 RVRMPALCAA RIFQLTRELG HRSDGETIEW LLRQAEPSII AATGSGTVPA AHEISCPAGP 120 TMTSASPPSV SCQVHPVGVG SGSVVAGMYT MTAPPPNCRL DLCQPVGFQY SAVGRSGYQH 180 MPFTALLLQP TTAAEEVEER QRVEDEEEEI RHHE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007027375.2 | 1e-158 | PREDICTED: transcription factor TCP11 | ||||
Swissprot | Q9SJK7 | 5e-44 | TCP11_ARATH; Transcription factor TCP11 | ||||
TrEMBL | A0A061ETZ0 | 1e-157 | A0A061ETZ0_THECC; Proliferating cell nuclear antigen gene-controlling element binding factor, putative | ||||
STRING | EOY07877 | 1e-158 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15265 | 16 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37000.1 | 2e-46 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG022197t1 |
Entrez Gene | 18597987 |
Publications ? help Back to Top | |||
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