PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GRAS

Protein Properties

Length: 756aa MW: 85337.1 Da PI: 6.5653

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG021920t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	387.1	2e-118	382	753	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l++lL++cA+av+++d + a++lL++++++ s gd +qRla++f+ +L+arla+++s++yk l +++ts s+ l+a+ l + ++P+ k+ Thecc1EG021920t1 382 LRTLLIHCAQAVAADDRRSANELLKQIRQHTSRFGDGNQRLAHCFADGLEARLAGTGSQIYKGLVSKRTS---ASDILKAYLLHVAACPFRKV 471 6789**********************************************************999999...9*************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 sh+++N++I a ++ ++H+iDf+i +G+QWp+L++ L+ R+egpp+lRiTg++ p++g +e++eetg+rLa +A+e++vpf++n+ +ak Thecc1EG021920t1 472 SHFICNKTINVASRKSMKLHVIDFGILYGFQWPTLIERLSLRSEGPPKLRITGIDFPQPGfrPAERVEETGRRLAAYAKEFKVPFQYNA-IAK 563 *******************************************************9*************************.7 PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 +++++++eeL+++++E ++Vn+ ++ ++llde+v+++s+r+ vL+l+++++P+++++ + +n++ F++rf eal ++s++fd+le+ +pr Thecc1EG021920t1 564 KWDNIRVEELDIHEDEFVVVNCLYRAKNLLDETVAVDSPRNIVLNLIRKINPNIFIHGIMNGAYNAPFFVTRFREALFHFSSMFDMLETIVPR 656 ******************************************************************************************* PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 e+ er+ +E+e+lgre+ nv+aceg er+er et+++W++r +aGF ++p++ +++k a +r ++ + + ++e+s +l++gWk+r ++++ Thecc1EG021920t1 657 EDWERMLIEKEILGREALNVIACEGWERVERPETFKQWHARNLRAGFVQLPFGREIVKGATERVRSFYHKDFVIDEDSRWLLQGWKGRIIYAL 749 ****************************************************************889****************** PP GRAS 371 SaWr 374 SaW+ Thecc1EG021920t1 750 SAWK 753 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.646	356	733	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.9E-116	382	753	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 756 aa Download sequence Send to blast
MVMDPRFRGF SGFQLSNQTV SVFPSQPASV FPNQNSVAGP RFQNTYIDHN FREFDYHPPD 60 PTPSNMAPIS SLSHEEDPSE DCDFSDSVLR YINHILLEED MEDKSCMLQE SLDLQAAEKS 120 FYDVLGKKYP PSPSAEQNST FVYESGENPD DSFVGNYSSY FSSCSDGSSY VIDTGRMQNL 180 GDYSTTQAQS LPVSGMSQSS YSSSMASIDG LIESPNSTLQ VPDWNGEIHS IWQFRKGVEE 240 ASKFIPGSEE LFGNLEVCGV ESQESKGWTS GLVVKEEKKD EGEYSPTGSK GKKISRRDDV 300 ETEEERCSKQ AAVYSESIVR SEMFDMVLLC SSGKAPTHFT NLRESLRNGT SKNVRQNGQS 360 KGPNGGKGRG KKQNGKKEVV DLRTLLIHCA QAVAADDRRS ANELLKQIRQ HTSRFGDGNQ 420 RLAHCFADGL EARLAGTGSQ IYKGLVSKRT SASDILKAYL LHVAACPFRK VSHFICNKTI 480 NVASRKSMKL HVIDFGILYG FQWPTLIERL SLRSEGPPKL RITGIDFPQP GFRPAERVEE 540 TGRRLAAYAK EFKVPFQYNA IAKKWDNIRV EELDIHEDEF VVVNCLYRAK NLLDETVAVD 600 SPRNIVLNLI RKINPNIFIH GIMNGAYNAP FFVTRFREAL FHFSSMFDML ETIVPREDWE 660 RMLIEKEILG REALNVIACE GWERVERPET FKQWHARNLR AGFVQLPFGR EIVKGATERV 720 RSFYHKDFVI DEDSRWLLQG WKGRIIYALS AWKPA*

Sequence ? help Back to Top

Protein Sequence Length: 756 aa Download sequence Send to blast

MVMDPRFRGF SGFQLSNQTV SVFPSQPASV FPNQNSVAGP RFQNTYIDHN FREFDYHPPD  60
PTPSNMAPIS SLSHEEDPSE DCDFSDSVLR YINHILLEED MEDKSCMLQE SLDLQAAEKS  120
FYDVLGKKYP PSPSAEQNST FVYESGENPD DSFVGNYSSY FSSCSDGSSY VIDTGRMQNL  180
GDYSTTQAQS LPVSGMSQSS YSSSMASIDG LIESPNSTLQ VPDWNGEIHS IWQFRKGVEE  240
ASKFIPGSEE LFGNLEVCGV ESQESKGWTS GLVVKEEKKD EGEYSPTGSK GKKISRRDDV  300
ETEEERCSKQ AAVYSESIVR SEMFDMVLLC SSGKAPTHFT NLRESLRNGT SKNVRQNGQS  360
KGPNGGKGRG KKQNGKKEVV DLRTLLIHCA QAVAADDRRS ANELLKQIRQ HTSRFGDGNQ  420
RLAHCFADGL EARLAGTGSQ IYKGLVSKRT SASDILKAYL LHVAACPFRK VSHFICNKTI  480
NVASRKSMKL HVIDFGILYG FQWPTLIERL SLRSEGPPKL RITGIDFPQP GFRPAERVEE  540
TGRRLAAYAK EFKVPFQYNA IAKKWDNIRV EELDIHEDEF VVVNCLYRAK NLLDETVAVD  600
SPRNIVLNLI RKINPNIFIH GIMNGAYNAP FFVTRFREAL FHFSSMFDML ETIVPREDWE  660
RMLIEKEILG REALNVIACE GWERVERPET FKQWHARNLR AGFVQLPFGR EIVKGATERV  720
RSFYHKDFVI DEDSRWLLQG WKGRIIYALS AWKPA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	4e-48	365	754	1	379	Protein SCARECROW
5b3h_D	4e-48	365	754	1	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007026998.2	0.0	PREDICTED: scarecrow-like protein 9
Refseq	XP_017976816.1	0.0	PREDICTED: scarecrow-like protein 9
Refseq	XP_017976817.1	0.0	PREDICTED: scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A061ER22	0.0	A0A061ER22_THECC; GRAS family transcription factor isoform 1
STRING	EOY07500	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM358	27	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG021920t1
Entrez Gene	18597743

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]