PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG021596t1
Common NameTCM_021596
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 709aa    MW: 79866 Da    PI: 5.5266
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG021596t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.5e-17200258155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpseng......krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ++y+GVr++  +g+WvAeIr p  ng       + r +lg+f  a eAa a+++a+k+++g
  Thecc1EG021596t1 200 CKYRGVRQRI-WGKWVAEIRQPI-NGvrvgnkGNNRLWLGTFSNAIEAALAYDKAAKAMYG 258
                       79*****998.**********74.4455544445************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-12200258IPR001471AP2/ERF domain
CDDcd000184.59E-28200268No hitNo description
PROSITE profilePS5103221.061201266IPR001471AP2/ERF domain
SMARTSM003806.7E-33201272IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18201267IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-26201267IPR001471AP2/ERF domain
PRINTSPR003678.0E-8202213IPR001471AP2/ERF domain
PRINTSPR003678.0E-8232248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MIDKAAVIST TKSSKKKMVF NTTSRIRIWS TALKTEPCKR KTILPRQEND GIYVGRGLAT  60
SHRSAYDPYK RRHGINVGYF SYPPDGVVTH INTQNKRKLK GTTCKATGCL RLFMSMSSPM  120
IRNSGSSVME DGVRARNKKP RRRRNGRESV EDTIEKWKKY NNDQLQLGEE VGLKKVGKVP  180
AKGSKKGCMQ GKGGPENSRC KYRGVRQRIW GKWVAEIRQP INGVRVGNKG NNRLWLGTFS  240
NAIEAALAYD KAAKAMYGPY ARLNFPDHSE ESAVHNSNNE SASSTNETCS TESTSISNSF  300
AEKAKESSVH YSSPVEEPEL HVVEESKVCL VDKPMEKRDC SQVYINEEAG CIAEDTATET  360
RGTEYNSRND CKPYKEQGVE VETLKEAMDH ELTELMRLHN DTNDYLHNEL KDEGCQLSIN  420
FLDSDDYNLQ TPFKKKEMES EVELSQNMLS SAYSGFNFRP NYMDNEEQDA GISIIDLEPS  480
NDVKVEMPVT RENWKCELAG SIESIDYNIF SGKDDNLQTE LTGGNLSLGF CYKPSSEMKA  540
EAPVLMEEVE VEHGGFTDFN SYKGFGKTYD HMPYEPTDMI CERQMNATTP TDFKAQTPIN  600
YGGFNSFKDK LDFLHSWPAE AITDVKPFAL IRNDNCGLRP KESYNSDQFE SSSTSYPERG  660
GLQDPIAEAQ GGFNQYETGF GEDYKLEFSR PDVDLDLGTD LWFPEHGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-15202266360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017976825.10.0PREDICTED: dehydration-responsive element-binding protein 2C
TrEMBLA0A061EPU60.0A0A061EPU6_THECC; Uncharacterized protein
STRINGEOY070750.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2867523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.11e-33ERF family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]