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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG021596t1 | ||||||||
Common Name | TCM_021596 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ERF | ||||||||
Protein Properties | Length: 709aa MW: 79866 Da PI: 5.5266 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.6 | 5.5e-17 | 200 | 258 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng......krkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g+WvAeIr p ng + r +lg+f a eAa a+++a+k+++g Thecc1EG021596t1 200 CKYRGVRQRI-WGKWVAEIRQPI-NGvrvgnkGNNRLWLGTFSNAIEAALAYDKAAKAMYG 258 79*****998.**********74.4455544445************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.3E-12 | 200 | 258 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.59E-28 | 200 | 268 | No hit | No description |
PROSITE profile | PS51032 | 21.061 | 201 | 266 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.7E-33 | 201 | 272 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-18 | 201 | 267 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-26 | 201 | 267 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-8 | 202 | 213 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-8 | 232 | 248 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 709 aa Download sequence Send to blast |
MIDKAAVIST TKSSKKKMVF NTTSRIRIWS TALKTEPCKR KTILPRQEND GIYVGRGLAT 60 SHRSAYDPYK RRHGINVGYF SYPPDGVVTH INTQNKRKLK GTTCKATGCL RLFMSMSSPM 120 IRNSGSSVME DGVRARNKKP RRRRNGRESV EDTIEKWKKY NNDQLQLGEE VGLKKVGKVP 180 AKGSKKGCMQ GKGGPENSRC KYRGVRQRIW GKWVAEIRQP INGVRVGNKG NNRLWLGTFS 240 NAIEAALAYD KAAKAMYGPY ARLNFPDHSE ESAVHNSNNE SASSTNETCS TESTSISNSF 300 AEKAKESSVH YSSPVEEPEL HVVEESKVCL VDKPMEKRDC SQVYINEEAG CIAEDTATET 360 RGTEYNSRND CKPYKEQGVE VETLKEAMDH ELTELMRLHN DTNDYLHNEL KDEGCQLSIN 420 FLDSDDYNLQ TPFKKKEMES EVELSQNMLS SAYSGFNFRP NYMDNEEQDA GISIIDLEPS 480 NDVKVEMPVT RENWKCELAG SIESIDYNIF SGKDDNLQTE LTGGNLSLGF CYKPSSEMKA 540 EAPVLMEEVE VEHGGFTDFN SYKGFGKTYD HMPYEPTDMI CERQMNATTP TDFKAQTPIN 600 YGGFNSFKDK LDFLHSWPAE AITDVKPFAL IRNDNCGLRP KESYNSDQFE SSSTSYPERG 660 GLQDPIAEAQ GGFNQYETGF GEDYKLEFSR PDVDLDLGTD LWFPEHGF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-15 | 202 | 266 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017976825.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 2C | ||||
TrEMBL | A0A061EPU6 | 0.0 | A0A061EPU6_THECC; Uncharacterized protein | ||||
STRING | EOY07075 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM28675 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38340.1 | 1e-33 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG021596t1 |
Entrez Gene | 18597455 |
Publications ? help Back to Top | |||
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