PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG020251t2
Common NameTCM_020251
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family FAR1
Protein Properties Length: 693aa    MW: 79985.9 Da    PI: 6.4678
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG020251t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1773.6e-2471162190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                       ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke      +w+v+++++ HnHel 
  Thecc1EG020251t2  71 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvegVTQWYVSQFSNVHNHELL 162
                       69********************8888.******************************************998767789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.8E-2271162IPR004330FAR1 DNA binding domain
PfamPF105512.1E-24294387IPR018289MULE transposase domain
PROSITE profilePS509669.977565601IPR007527Zinc finger, SWIM-type
PfamPF044347.4E-9571600IPR007527Zinc finger, SWIM-type
SMARTSM005753.9E-4576603IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MTMKPSNNIW IRCQQCPCGD WKCYVKYEGD DQTSVSSQLI KNETTSASAS SEAVFTPYVG  60
QIFKSDDDAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH  120
PRDRKSVRCG CDAKLYLTKE IVEGVTQWYV SQFSNVHNHE LLEDDQVRLL PAYRKIQEAD  180
QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTCKKTV QENDALLTEK  240
RENDTLELLE ACKAMSVRDA NFVYDYTTDE NNKVENIAWS YGDSVHAYTV FGDVITFDTT  300
YRSITYGLLL GVWFGIDNHG KPIFFGCVLL QDESSNSFTW ALQTFLHFMR GRHPQTILTD  360
LDSSLRDAIA RELPNTKHVI CLWHVLSKLS SWFSLPLGSQ YVEFKAEFDT LCHSVGIEEF  420
EHQWNLLVAR FGLASDKHIA LLFSYRTSWL LSYIRGYFLA RSMTADFSQS LDAFLKRILS  480
GQTCLQSFFE QVGVAADLRN QSREGMQYMH IKTCLPIEEN ARSILTPYAF NALQHEIVLS  540
MQYATTEMGN GSYLVQHYKK MDGEYLVIWI PQEEQIHCSC KEFEHSGILC RHCLRVLIVK  600
NYFEIPEKYV LFRWRLESSL VPVEDQNAQW SSDECVQAFH SLAATLLTES LFTKERFNHV  660
HRELTRLLDY VKDMPVCNEF ALNMAANNIS ES*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007034252.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_007034253.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A061EKM90.0A0A061EKM9_THECC; FAR1-related sequence 10 isoform 1
STRINGEOY051780.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]