PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 564aa MW: 61162.6 Da PI: 8.7615

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG020177t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.8	9.5e-09	388	435	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Thecc1EG020177t2 388 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 435 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.32E-17	382	453	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.64E-11	382	439	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.5E-17	384	452	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	384	434	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.7E-6	388	435	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	390	440	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 564 aa Download sequence Send to blast
MEKDKVLMAE GLNRTAAPPT WNSCSFGMDM QTNELNCATE QVGSCFFNPN WDKSMDQSDP 60 FESALSSMVS SPAASNAGST LPGFGENVMI RELIGRLGNI CNSGDISPQS FVKPNNNTNS 120 GNTSCYSTPL NSPPKLNLSM VESQIRGNLN LPGLGNQLPN HPSLAPFSAD PGFAERAARF 180 SCFSTTSRNF GGLNGQLGLT ETELPQRLRP RMDSVKLSRV SSNQSIKVTG SQVNVPESNK 240 NSPQEGSSGS DKKNSRLSRS SSPENAEFGD SKEESSVSEQ IPGGDSSIKV QNDANARKRK 300 SIPRGKAKET PSPVAADAKV APENGESTAK RSKQEEAAGN AKEKTEQNGN GKAANDGNQK 360 QGKENSKPPE PPKDYIHVRA RRGQATDSHS LAERVRREKI SERMKFLQDL VPGCNKVTGK 420 AVMLDEIINY VQSLQRQVEF LSMKLSTVNP RMDINMEALL SKDMFRSGGS LPHALYSMDS 480 SAPAFPFGYQ LQQQALPLHS GISNNIETQF SMNPLNAVLR KTQGVQLPPI DGFTDANPQV 540 IYKITCLVCS IFYLILFRIS IRS*

Sequence ? help Back to Top

Protein Sequence Length: 564 aa Download sequence Send to blast

MEKDKVLMAE GLNRTAAPPT WNSCSFGMDM QTNELNCATE QVGSCFFNPN WDKSMDQSDP  60
FESALSSMVS SPAASNAGST LPGFGENVMI RELIGRLGNI CNSGDISPQS FVKPNNNTNS  120
GNTSCYSTPL NSPPKLNLSM VESQIRGNLN LPGLGNQLPN HPSLAPFSAD PGFAERAARF  180
SCFSTTSRNF GGLNGQLGLT ETELPQRLRP RMDSVKLSRV SSNQSIKVTG SQVNVPESNK  240
NSPQEGSSGS DKKNSRLSRS SSPENAEFGD SKEESSVSEQ IPGGDSSIKV QNDANARKRK  300
SIPRGKAKET PSPVAADAKV APENGESTAK RSKQEEAAGN AKEKTEQNGN GKAANDGNQK  360
QGKENSKPPE PPKDYIHVRA RRGQATDSHS LAERVRREKI SERMKFLQDL VPGCNKVTGK  420
AVMLDEIINY VQSLQRQVEF LSMKLSTVNP RMDINMEALL SKDMFRSGGS LPHALYSMDS  480
SAPAFPFGYQ LQQQALPLHS GISNNIETQF SMNPLNAVLR KTQGVQLPPI DGFTDANPQV  540
IYKITCLVCS IFYLILFRIS IRS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007034153.2	0.0	PREDICTED: transcription factor bHLH62
TrEMBL	A0A061EJ83	0.0	A0A061EJ83_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 2
STRING	EOY05079	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	9e-86	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG020177t2
Entrez Gene	18602600

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]