PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG020035t1
Common NameTCM_020035
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family FAR1
Protein Properties Length: 212aa    MW: 24290.8 Da    PI: 8.1302
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG020035t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR184.22e-2646134290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       fY+eYA++vGF +r+ + ++s+r+g+i  r++ C+keg+  + + k    r++r++tr gCka++++k +k+gkw++t+++++HnH+l+
  Thecc1EG020035t1  46 FYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFGPVRKPRPSTREGCKAMIHIKFDKSGKWVITRFVKDHNHPLV 134
                       9**************************************99999998****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-2446134IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MDLDEGAEAI ESFTGGETVA VPCEGDSIVE PHEGMEFESE DAAKIFYDEY ARRVGFVMRV  60
MSCRRSERDG RILARRLGCN KEGYCVSIRG KFGPVRKPRP STREGCKAMI HIKFDKSGKW  120
VITRFVKDHN HPLVVAPREA RQTMDEKDKK IQELTAELRN KKRLCAAYQE QLTAFMKIVE  180
EHSNQLSKKV QNVVNNLKEY ESIELELLQH R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007033943.11e-157PREDICTED: protein FAR1-RELATED SEQUENCE 5
RefseqXP_021290971.11e-157protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A061ERC21e-156A0A061ERC2_THECC; Far-red impaired responsive (FAR1) family protein
STRINGEOY048691e-156(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39182855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.11e-114FAR1 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]