PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG020034t1

Common Name

TCM_020034

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 208aa MW: 24290.4 Da PI: 6.4269

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG020034t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.2	3e-19	46	129	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA++ GF +r+ +s+ks+ +g ++r + C + +++e + ++++++r +C a+++++++k+g+w+++k++ +HnH+l+ Thecc1EG020034t1 46 FYENYARQRGFFTRVLSSHKSELDGLLISRGLGCRGYFDNQTEVQL-----QKQEKQRESCSAMIHLRRDKTGRWVIKKFVRDHNHPLV 129 9*******************************998888887766.....889999****************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-16	46	129	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MDELVDDVDG RLEASTGDES DMHEYDSIQE PYVGMIFESE EAAKIFYENY ARQRGFFTRV 60 LSSHKSELDG LLISRGLGCR GYFDNQTEVQ LQKQEKQRES CSAMIHLRRD KTGRWVIKKF 120 VRDHNHPLVI RLEESCRRLD EEKDKKIQEL TAELRVKKRL SASYREQLVA FMKEVEDHNY 180 HISMKVQATL DNLKTLDAKA HELLHGR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007033942.2	1e-150	PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBL	A0A061EJN6	1e-151	A0A061EJN6_THECC; Far-red impaired responsive family protein, putative
STRING	EOY04868	1e-152	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22264	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	7e-55	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG020034t1
Entrez Gene	18602482

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]