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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG020031t1 | ||||||||
Common Name | TCM_020031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | FAR1 | ||||||||
Protein Properties | Length: 245aa MW: 28225.7 Da PI: 7.5425 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.7 | 7.2e-27 | 75 | 166 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr.traetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+ Y++++GF++r++++++s ++++i+ r+fvCskeg+r+e+ +k+e + +r+ tr gC+a+l++ ++ gkw+++ + +eHnHel+p Thecc1EG020031t1 75 EFYEMYGRRMGFTIRNNRTRRSLKDNSIIGREFVCSKEGFRAEKYTKREYRVCpSRPATREGCNAMLRIAAKDGGKWVIYGFIKEHNHELNP 166 6******************************************9988443333599*********************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-23 | 75 | 166 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MASTSGQGLN SSRNYRQWLA ETFDGHETLD DELSDSNVDG NGNLISPLDQ NFPMTLEAGE 60 PYTGMEFESA EAAREFYEMY GRRMGFTIRN NRTRRSLKDN SIIGREFVCS KEGFRAEKYT 120 KREYRVCPSR PATREGCNAM LRIAAKDGGK WVIYGFIKEH NHELNPSKIP PRRSHRIAFC 180 EDEKDLKIRE LSTELHREKK KSAAYLEQLQ MVLKYVEEHT QRLSLKVDVV SGNLRELESV 240 DRIF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007033939.2 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_017974712.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_017974713.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5 | ||||
Swissprot | Q9SZL8 | 1e-28 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A061EIL1 | 0.0 | A0A061EIL1_THECC; Far-red impaired responsive family protein | ||||
STRING | EOY04865 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18086 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 4e-48 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG020031t1 |
Entrez Gene | 18602480 |
Publications ? help Back to Top | |||
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