PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG020030t1
Common NameTCM_020030
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family FAR1
Protein Properties Length: 267aa    MW: 30603.5 Da    PI: 6.4268
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG020030t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR181.91.1e-2588178190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +fY +Y++++GF+vr++++++s+ n++++ ++fvCskeg+r+++   ++++    + + tr gC+a++++ +++ +kw+vtk+++ HnH+l+
  Thecc1EG020030t1  88 EFYAAYGRRTGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYIYRKDR-VlpPPPITREGCQAMIRLALRDGAKWVVTKFVKGHNHKLM 178
                       6******************************************99883332.234899********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-2288178IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MFQCFLQSTI GSMMDNQSSL EFDSDESDLD VRAEEHGQME DVLQKNLDFC VSEDEKLAEQ  60
SGGSLSHITD ALEPYMGMEF NSRDEAREFY AAYGRRTGFT VRIHHNRRSR VNNQVIGQDF  120
VCSKEGFRAK KYIYRKDRVL PPPPITREGC QAMIRLALRD GAKWVVTKFV KGHNHKLMSP  180
NKVPLRESGK HLVGEDEKDK RIRELSLELY NERQKCKRRC AAYEEQLNLI LKDLENHTAH  240
ISKTVADMVQ SIKEIEEEQS VSDGVG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021291086.10.0protein FAR1-RELATED SEQUENCE 6-like isoform X2
TrEMBLA0A061EJ250.0A0A061EJ25_THECC; Far-red impaired responsive family protein isoform 1
STRINGEOY048610.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16529711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.13e-42FAR1 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]