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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Thecc1EG020013t1 |
| Common Name | TCM_020013 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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| Family |
DBB |
| Protein Properties |
Length: 239aa MW: 26280.9 Da PI: 4.4368 |
| Description |
DBB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thecc1EG020013t1 | genome | CGD | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 21.8 | 3.9e-07 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
C+ +e+ +++ C ++ lC++C +e H H++
Thecc1EG020013t1 4 QCDVCERAPATVICCADEAALCAKCDVEVHAAnklaskHQR 44
7*****************************65667777765 PP
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| 2 | zf-B_box | 29.1 | 2.1e-09 | 53 | 94 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
+ + C+ ++ek + +fC +++ l+C+dC + +H+ H
Thecc1EG020013t1 53 KLPPCDICQEKAAFIFCVEDRALFCQDCDEPIHSAgslsanH 94
6789*****************************656666666 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 239 aa
Download sequence Send
to blast |
MKIQCDVCER APATVICCAD EAALCAKCDV EVHAANKLAS KHQRLLLQCL SNKLPPCDIC 60
QEKAAFIFCV EDRALFCQDC DEPIHSAGSL SANHQRFLAT GIRVALSSSC NKNTEKSGLE 120
PPNKSAPQTS MKMPVQQQSN FTSSWAVDDL LQFSDIESPE KKEQLELGEL EWLADIGLFG 180
EQLPQEALAP AEVPQLPIPQ SANFNSCRPT RYSMPLKKPR IEIPEDDDDE FFTVPDLG*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:23624715}. |
| Publications
? help Back to Top |
- Motamayor JC, et al.
The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
Genome Biol., 2013. 14(6): p. r53
[PMID:23731509] - Gangappa SN,Holm M,Botto JF
Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development.
Plant Signal Behav, 2014.
[PMID:23733077] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Zhang X,Lin R
Light signaling differentially regulates the expression of group IV of the B-box zinc finger family.
Plant Signal Behav, 2017. 12(9): p. e1365213
[PMID:28922622]
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