PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

M-type_MADS

Protein Properties

Length: 268aa MW: 30811.6 Da PI: 8.3997

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG019362t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	49.3	6.1e-16	9	48	1	40
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 k ien+ r+ f kRrn +lKKA+ELS+LCd++++viif Thecc1EG019362t1 9 KVIENEKARKRVFEKRRNNLLKKAKELSILCDIKILVIIF 48 679***********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.5E-19	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	20.339	1	48	IPR002100	Transcription factor, MADS-box
CDD	cd00120	6.92E-20	2	48	No hit	No description
SuperFamily	SSF55455	4.71E-19	2	79	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-10	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.2E-15	11	48	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-10	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-10	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MGKRKMEMKV IENEKARKRV FEKRRNNLLK KAKELSILCD IKILVIIFEL GIPKAQIWPD 60 NDEEATQIIN RFKQQPVKGD SKKAYYDSFA SKKKNFGEKV PISEYKTMIN HFSENQLQNL 120 CYELDAKIAA MMNAINSKQD LTEGPMPKML AAECQGKGFL NKGRGKEVDI YQEPIPIQQD 180 QSFEMLYHKP NFMESPMMMQ NDISYPQFDG STSSSNIPYV PLPIHHVDPS WMQPAYMSYY 240 DPTIHHIPPG IYYPVMPSFP SLTNESG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007033169.2	0.0	PREDICTED: MADS-box protein AGL42
Refseq	XP_017974258.1	0.0	PREDICTED: MADS-box protein AGL42
TrEMBL	A0A061EGG2	0.0	A0A061EGG2_THECC; Uncharacterized protein
STRING	EOY04095	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22172	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	4e-13	AGAMOUS-like 30

Link Out ? help Back to Top
Phytozome	Thecc1EG019362t1
Entrez Gene	18601990

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]