PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG019192t1
Common NameTCM_019192
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 275aa    MW: 31281.1 Da    PI: 7.5504
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG019192t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81e-171562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd ll+++++++G g W+ ++++ g++R++k+c++rw++yl
  Thecc1EG019192t1 15 KGAWTEEEDILLKKCIEKYGEGKWHQVPSKAGLNRCRKSCRLRWLNYL 62
                      79********************************************97 PP
2Myb_DNA-binding46.21e-1468113148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg + ++E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  Thecc1EG019192t1  68 RGDFAADEVDLIIRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 113
                       6788899***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.6861066IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-221264IPR009057Homeodomain-like
SuperFamilySSF466897.34E-2912109IPR009057Homeodomain-like
SMARTSM007176.1E-161464IPR001005SANT/Myb domain
PfamPF002492.0E-161562IPR001005SANT/Myb domain
CDDcd001679.76E-121762No hitNo description
Gene3DG3DSA:1.10.10.602.4E-2265116IPR009057Homeodomain-like
PROSITE profilePS5129418.23767117IPR017930Myb domain
SMARTSM007171.1E-1367115IPR001005SANT/Myb domain
PfamPF002492.7E-1368113IPR001005SANT/Myb domain
CDDcd001675.97E-1073113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MYRKPMEGLS LGVRKGAWTE EEDILLKKCI EKYGEGKWHQ VPSKAGLNRC RKSCRLRWLN  60
YLKPNIKRGD FAADEVDLII RLHKLLGNRW SLIAGRLPGR TANDVKNYWN THLLKKFNPS  120
KQKARDDDQN PSNPNNIVIK PRPRTLSKKS FPVQLGGTNI NDNNSEAATA SHNLLADADN  180
SYYIPADNDQ IIWWENLLIN DNDAVDVQHA AASFNNSNTK SGTGDQTVLN SIDKYEEIGE  240
RTMVVEVGNN SSWDELFRDV QLWNVFNPEP EDYV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-22151174105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007033038.10.0PREDICTED: transcription factor MYB75 isoform X1
SwissprotQ9FNV91e-66MY113_ARATH; Transcription factor MYB113
TrEMBLA0A061ENQ70.0A0A061ENQ7_THECC; R2R3 MYB transcription factor splice variant 1
STRINGEOY039640.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.15e-69myb domain protein 113
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]