PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

G2-like

Protein Properties

Length: 328aa MW: 37417.4 Da PI: 8.3526

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG019009t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.3	1.1e-30	224	278	2	56
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 +r+ W+peLH+rFvea++ LGG+e+AtPk+i+e+m+v+gLt+++vkSHLQkYRl+ Thecc1EG019009t1 224 NRRSWSPELHARFVEALNLLGGIEVATPKQIREVMQVEGLTNDQVKSHLQKYRLH 278 799**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.601	220	280	IPR017930	Myb domain
SuperFamily	SSF46689	5.55E-17	221	281	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.9E-27	222	281	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.6E-25	223	278	IPR006447	Myb domain, plants
Pfam	PF00249	7.5E-8	225	276	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MASSSSLELN LSLKPSYVPK TIANLLKDLS HVDTASDKLA VLNDYINQHE EELNNIVAFK 60 HQLPQCMLLL MEALGTLKDE FMSIKNGMES ETGRPLMEFL AIKRKHYEEE QTDVSAAEKY 120 DCKGKSLMRS SPQFWNSNCN NKKQKTFIEF IQAPNQNPIP FKESTFSSSL AEKGCISKEI 180 IRKSYSRFAS VGTNNGDSRL NLRADNRTLN YHPRPLTQPI WKNNRRSWSP ELHARFVEAL 240 NLLGGIEVAT PKQIREVMQV EGLTNDQVKS HLQKYRLHCR RLPENYAKCL VKLQDPWHPQ 300 MYYGDPLSPE DSDENNSNPE GSLSRKS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-15	225	276	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-15	225	276	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-15	225	276	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-15	225	276	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-15	225	276	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-15	225	276	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-15	225	276	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-15	225	276	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017974521.1	0.0	PREDICTED: myb family transcription factor EFM
TrEMBL	A0A061EHD1	0.0	A0A061EHD1_THECC; DNA binding protein, putative
STRING	EOY03817	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15410	7	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	2e-37	G2-like family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG019009t1
Entrez Gene	18601775

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]