![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG018809t1 | ||||||||
Common Name | TCM_018809 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 367aa MW: 40293.7 Da PI: 8.6957 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 112.7 | 5.1e-35 | 48 | 190 | 2 | 136 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksa 94 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ +++ +++ + s+s++ +++++++ Thecc1EG018809t1 48 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPVPPGNFSLNHQMVLSTSQEAGASQSNKE 140 689******************************************************************999777777777755555333333 PP TCP 95 a.kskksqksaasalnlakesr...........akarararertrekmriknkl 136 k+++s + + + sr ak+++ +re t+ek + ++++ Thecc1EG018809t1 141 GiKTSSSVNWED----PGGLSRssfwssdafwrAKSKEVERETTNEKDNWNKRN 190 323333333222....22222222344455555999999***999999988655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.2E-30 | 50 | 192 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.469 | 50 | 108 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 367 aa Download sequence Send to blast |
MIASSKEADS PARQEGNTND TKFNKGPSSS SPWLRLKDPR IVRVSRAFGG KDRHSKVCTI 60 RGLRDRRVRL SVPTAIQLYD LQDRLGLNQP SKVVDWLLNA AKHEIDELPP LPVPPGNFSL 120 NHQMVLSTSQ EAGASQSNKE GIKTSSSVNW EDPGGLSRSS FWSSDAFWRA KSKEVERETT 180 NEKDNWNKRN EEEKQGGSEG HHGAQVSSDS LLQRANHSSL PALLNNAMPY GSYYHFEPSN 240 FPLAHLGSHG FGSHAEDLHN FNVVPLPSTL SLSSGSQILV CPPGATQPLF PPHATASLEI 300 DPRQQVNHFQ MLSSGAQNLL PNSLNPPPYS IGQSTRPFHL SMTPRLPHSH NSSGSQPDKQ 360 QEFPSK* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-18 | 55 | 109 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-18 | 55 | 109 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
![]() |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AM486098 | 2e-72 | AM486098.2 Vitis vinifera contig VV78X124714.9, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007032773.2 | 0.0 | PREDICTED: transcription factor TCP13 | ||||
Refseq | XP_007032774.2 | 0.0 | PREDICTED: transcription factor TCP13 | ||||
Refseq | XP_017975605.1 | 0.0 | PREDICTED: transcription factor TCP13 | ||||
TrEMBL | A0A061EN21 | 0.0 | A0A061EN21_THECC; Plastid transcription factor 1, putative isoform 1 | ||||
STRING | EOY03699 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9134 | 26 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02150.2 | 4e-53 | plastid transcription factor 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG018809t1 |
Entrez Gene | 18601674 |
Publications ? help Back to Top | |||
---|---|---|---|
|