PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Dof

Protein Properties

Length: 519aa MW: 56100 Da PI: 6.3553

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG018573t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.1	1.1e-39	157	217	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Thecc1EG018573t1 157 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA 217 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-31	154	214	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.1E-32	159	215	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	161	215	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	163	199	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence Send to blast
MSEPKDPAIK LFGKTIPLPD KSPKAAAAAT SANFCATCGD DNNNNNIDQD EDRCCSTNSS 60 PDENKTEERE AEKDTLGDET TETEQEVGGI KEDGLKQEGG APPVTSGEST NLEATSGASE 120 NPKTPSVEKE STALKTSKAE EDQSETSNSQ EKTLKKPDKI LPCPRCNSMD TKFCYYNNYN 180 VNQPRHFCKN CQRYWTAGGT MRNVPVGAGR RKNKNSASHY RHITVSEALH NAQTEIPSGV 240 HHPALKANGT VLTFGSDAPL CESMASVLNL ADKTMRNTTR NGFHKPEELK IPVSYRGGQN 300 GFECSNGSSV PTSKDEAGKA GSQDQMVRNC QGFSPQMPCF PGAPWPYPWN SAQWNSPIPP 360 HAFCSPGFPM PFYPAAAYWG CTVPGTWNVP WLPQPSSPKK TAPSSGPNSP TLGKHSRDEN 420 MGKLSNSGEE EPVKENNAEK CLWIPKTLRI NDPGEAARSS IWATLGIKND KPDSIGSGGL 480 FKSFQSKGDE RNQVPETSPV LQANPAALSR SINFHESS*

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence Send to blast

MSEPKDPAIK LFGKTIPLPD KSPKAAAAAT SANFCATCGD DNNNNNIDQD EDRCCSTNSS  60
PDENKTEERE AEKDTLGDET TETEQEVGGI KEDGLKQEGG APPVTSGEST NLEATSGASE  120
NPKTPSVEKE STALKTSKAE EDQSETSNSQ EKTLKKPDKI LPCPRCNSMD TKFCYYNNYN  180
VNQPRHFCKN CQRYWTAGGT MRNVPVGAGR RKNKNSASHY RHITVSEALH NAQTEIPSGV  240
HHPALKANGT VLTFGSDAPL CESMASVLNL ADKTMRNTTR NGFHKPEELK IPVSYRGGQN  300
GFECSNGSSV PTSKDEAGKA GSQDQMVRNC QGFSPQMPCF PGAPWPYPWN SAQWNSPIPP  360
HAFCSPGFPM PFYPAAAYWG CTVPGTWNVP WLPQPSSPKK TAPSSGPNSP TLGKHSRDEN  420
MGKLSNSGEE EPVKENNAEK CLWIPKTLRI NDPGEAARSS IWATLGIKND KPDSIGSGGL  480
FKSFQSKGDE RNQVPETSPV LQANPAALSR SINFHESS*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021297674.1	0.0	cyclic dof factor 2
TrEMBL	A0A061EGG3	0.0	A0A061EGG3_THECC; Dof zinc finger protein DOF5.2
STRING	EOY03487	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5441	28	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-116	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Thecc1EG018573t1
Entrez Gene	18601533

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]