PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GRAS

Protein Properties

Length: 626aa MW: 67953.4 Da PI: 6.4299

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG017746t3	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	250.7	5.7e-77	403	624	2	236
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 +lLl+cAeavs++++e+a+++L +ls+l++p g++ qR+aayf eA++arl++s+ ++++ lp+ ++s ++++ ++a+++f+ +sP++kfs Thecc1EG017746t3 403 LTLLLQCAEAVSANNFEEANRMLLELSQLSTPFGTSAQRVAAYFSEAMSARLVSSCLGISAELPSIPQS--HTQKMVSAFQVFNGISPFVKFS 493 579**********************************************************999987..5899999*********** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187 h+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+g s e+le+tg+rL++fA++lg+pfef + va+++ Thecc1EG017746t3 494 HFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPHVRLTGLGT----SLEALEATGKRLSDFADKLGLPFEFCP-VAEKVG 581 ***************************************************....9**********************.7* PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsP 236 +le+e+L+v+++Ea+aV++ h+l+d ++s ++ +L+l+++ P Thecc1EG017746t3 582 NLEPERLNVSKREAVAVHWLQ--HSLYDVTGSDTN----TLWLLQGWHP 624 *****************99..999988888888....8888777666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	43.602	376	625	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.0E-74	403	624	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008356	Biological Process	asymmetric cell division
GO:0009630	Biological Process	gravitropism
GO:0009956	Biological Process	radial pattern formation
GO:0048366	Biological Process	leaf development
GO:0051457	Biological Process	maintenance of protein location in nucleus
GO:0090610	Biological Process	bundle sheath cell fate specification
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 626 aa Download sequence Send to blast
MAACDLVGEN GSEINGCSNS RESPVTSASN SSTSEGKMMR KRMASEIADY HRFPRRSLPS 60 HPPSENMGCS FLAAATTANN PNPLLNYSTM NMNTTIIPSA NLTAVTSGGP AFLCTTTSNI 120 TCIDNLSTTN PPPPAVCGFS GLPLFPPTDR NRNTVAASTT TATTAPVALT PISNSMDDTS 180 ATAWIDGIIR DLIHTSSNVS IPQLIQNVRE IIYPCNPNLA ALLEYRLRSL MDPLERRRKE 240 TPPVHLPAGL IPRHHSQHQQ QQHGSSGLTL NLDSALDSVP NYSFTESCAM SQYLNWGITP 300 LPISNSAATG SNQHHHNQIS SSPSAPTPPV LSLNQTQHQP QVPHQAQEQP LPEENSSPVE 360 KTTTSTTTTT PTSTVQAVQA CSVRDRKEEL RQQKRDEEGL HLLTLLLQCA EAVSANNFEE 420 ANRMLLELSQ LSTPFGTSAQ RVAAYFSEAM SARLVSSCLG ISAELPSIPQ SHTQKMVSAF 480 QVFNGISPFV KFSHFTANQA IQEAFEREER VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH 540 VRLTGLGTSL EALEATGKRL SDFADKLGLP FEFCPVAEKV GNLEPERLNV SKREAVAVHW 600 LQHSLYDVTG SDTNTLWLLQ GWHPK*

Sequence ? help Back to Top

Protein Sequence Length: 626 aa Download sequence Send to blast

MAACDLVGEN GSEINGCSNS RESPVTSASN SSTSEGKMMR KRMASEIADY HRFPRRSLPS  60
HPPSENMGCS FLAAATTANN PNPLLNYSTM NMNTTIIPSA NLTAVTSGGP AFLCTTTSNI  120
TCIDNLSTTN PPPPAVCGFS GLPLFPPTDR NRNTVAASTT TATTAPVALT PISNSMDDTS  180
ATAWIDGIIR DLIHTSSNVS IPQLIQNVRE IIYPCNPNLA ALLEYRLRSL MDPLERRRKE  240
TPPVHLPAGL IPRHHSQHQQ QQHGSSGLTL NLDSALDSVP NYSFTESCAM SQYLNWGITP  300
LPISNSAATG SNQHHHNQIS SSPSAPTPPV LSLNQTQHQP QVPHQAQEQP LPEENSSPVE  360
KTTTSTTTTT PTSTVQAVQA CSVRDRKEEL RQQKRDEEGL HLLTLLLQCA EAVSANNFEE  420
ANRMLLELSQ LSTPFGTSAQ RVAAYFSEAM SARLVSSCLG ISAELPSIPQ SHTQKMVSAF  480
QVFNGISPFV KFSHFTANQA IQEAFEREER VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH  540
VRLTGLGTSL EALEATGKRL SDFADKLGLP FEFCPVAEKV GNLEPERLNV SKREAVAVHW  600
LQHSLYDVTG SDTNTLWLLQ GWHPK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-142	386	625	3	244	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269\|PubMed:16339910}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017975683.1	0.0	PREDICTED: protein SCARECROW
Swissprot	Q2Z2E9	1e-175	SCR_IPONI; Protein SCARECROW
TrEMBL	A0A061EDZ9	0.0	A0A061EDZ9_THECC; GRAS family transcription factor isoform 3
STRING	EOY03173	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	1e-141	GRAS family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG017746t3
Entrez Gene	18601285

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]