PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG017746t1
Common NameTCM_017746
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GRAS
Protein Properties Length: 796aa    MW: 86321.2 Da    PI: 6.2912
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG017746t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS418.46e-1284217782374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        +lLl+cAeavs++++e+a+++L +ls+l++p g++ qR+aayf eA++arl++s+ ++++ lp+ ++s  ++++ ++a+++f+ +sP++kfs
  Thecc1EG017746t1 421 LTLLLQCAEAVSANNFEEANRMLLELSQLSTPFGTSAQRVAAYFSEAMSARLVSSCLGISAELPSIPQS--HTQKMVSAFQVFNGISPFVKFS 511
                       579************************************************************999987..5899999*************** PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                       h+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+g     s e+le+tg+rL++fA++lg+pfef + va+++ 
  Thecc1EG017746t1 512 HFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPHVRLTGLGT----SLEALEATGKRLSDFADKLGLPFEFCP-VAEKVG 599
                       *******************************************************....9**************************.7***** PP

              GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                       +le+e+L+v+++Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl  f+ea++yysalfdsl a++++ese
  Thecc1EG017746t1 600 NLEPERLNVSKREAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGTFVEAIHYYSALFDSLGASYGEESE 685
                       ********************9..999999999999....**********************.899**************************** PP

              GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                       er++vE++ll++ei+nv+a  g +r e+ + +++Wre+l+++GFk ++l  +aa+qa lll +++sdgy++ e++g+l lgWkd  L+++SaW
  Thecc1EG017746t1 686 ERHVVEQQLLSKEIRNVLALGGPSRSEEVK-FHNWREKLQQSGFKGISLAGNAATQATLLLGMFPSDGYTLVEDNGALKLGWKDLCLLTASAW 777
                       ************************999887.************************************************************** PP

              GRAS 374 r 374
                       r
  Thecc1EG017746t1 778 R 778
                       8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.519394758IPR005202Transcription factor GRAS
PfamPF035142.1E-125421778IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 796 aa     Download sequence    Send to blast
MPPILAPSLA AAPDTLLFMA ACDLVGENGS EINGCSNSRE SPVTSASNSS TSEGKMMRKR  60
MASEIADYHR FPRRSLPSHP PSENMGCSFL AAATTANNPN PLLNYSTMNM NTTIIPSANL  120
TAVTSGGPAF LCTTTSNITC IDNLSTTNPP PPAVCGFSGL PLFPPTDRNR NTVAASTTTA  180
TTAPVALTPI SNSMDDTSAT AWIDGIIRDL IHTSSNVSIP QLIQNVREII YPCNPNLAAL  240
LEYRLRSLMD PLERRRKETP PVHLPAGLIP RHHSQHQQQQ HGSSGLTLNL DSALDSVPNY  300
SFTESCAMSQ YLNWGITPLP ISNSAATGSN QHHHNQISSS PSAPTPPVLS LNQTQHQPQV  360
PHQAQEQPLP EENSSPVEKT TTSTTTTTPT STVQAVQACS VRDRKEELRQ QKRDEEGLHL  420
LTLLLQCAEA VSANNFEEAN RMLLELSQLS TPFGTSAQRV AAYFSEAMSA RLVSSCLGIS  480
AELPSIPQSH TQKMVSAFQV FNGISPFVKF SHFTANQAIQ EAFEREERVH IIDLDIMQGL  540
QWPGLFHILA SRPGGPPHVR LTGLGTSLEA LEATGKRLSD FADKLGLPFE FCPVAEKVGN  600
LEPERLNVSK REAVAVHWLQ HSLYDVTGSD TNTLWLLQRL APKVVTVVEQ DLSHAGSFLG  660
TFVEAIHYYS ALFDSLGASY GEESEERHVV EQQLLSKEIR NVLALGGPSR SEEVKFHNWR  720
EKLQQSGFKG ISLAGNAATQ ATLLLGMFPS DGYTLVEDNG ALKLGWKDLC LLTASAWRPF  780
YASAASATTI HRCSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.04047793380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017975683.10.0PREDICTED: protein SCARECROW
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A061EF070.0A0A061EF07_THECC; GRAS family transcription factor isoform 1
STRINGEOY031730.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81642640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]