PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG017493t1

Common Name

TCM_017493

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 427aa MW: 49483.6 Da PI: 8.2061

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG017493t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.7	1.5e-21	85	175	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 kfY++YA +GF vrk + +++ ++g ++++f Cskeg+r+e+ +k +++ r+++ ++rt+Cka+++v ++k +gk +v+++eleHnH+++ Thecc1EG017493t1 85 KFYKAYACAMGFGVRKGSCRRN-KDGIEVMKHFACSKEGHRAEKWEKlENRVREPKRSSRTDCKANIRVILNKdTGKRYVSHCELEHNHQMV 175 6******************9.666677899*******998867788899************9999*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-18	85	175	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.361	309	347	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.0E-5	317	341	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.6E-6	322	349	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MSVNRDVTAI VMGQREARDN RREASTNILH PECRLKPRKA LVSAFALPWL MENKENNLSN 60 AKYLHELSKD DILSLEFDDL EDVYKFYKAY ACAMGFGVRK GSCRRNKDGI EVMKHFACSK 120 EGHRAEKWEK LENRVREPKR SSRTDCKANI RVILNKDTGK RYVSHCELEH NHQMVNPAQI 180 CFIRSNRQIK VADVCEAKAV KVAGLNTFIA SLAKERKTLL EFVRAIEDGI KNIRNNEIGE 240 DYISIHTKPV SSQIFKDIEK HAASVYTGRA FKKFIDEMRL QQLFYHECRF DDEPSIRVYQ 300 LMKYGDLFER IRVEFHVDDE NIKCSCLKFE TDGIPCPHII HVMILEQLNR IPLNLIMKRW 360 TKNAKDDAPT VVDDNVDPKY QKMPRCLLDD NDVDVYERNK EVWPSQLGTL FGGDSSECET 420 SKARQQ*

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MSVNRDVTAI VMGQREARDN RREASTNILH PECRLKPRKA LVSAFALPWL MENKENNLSN  60
AKYLHELSKD DILSLEFDDL EDVYKFYKAY ACAMGFGVRK GSCRRNKDGI EVMKHFACSK  120
EGHRAEKWEK LENRVREPKR SSRTDCKANI RVILNKDTGK RYVSHCELEH NHQMVNPAQI  180
CFIRSNRQIK VADVCEAKAV KVAGLNTFIA SLAKERKTLL EFVRAIEDGI KNIRNNEIGE  240
DYISIHTKPV SSQIFKDIEK HAASVYTGRA FKKFIDEMRL QQLFYHECRF DDEPSIRVYQ  300
LMKYGDLFER IRVEFHVDDE NIKCSCLKFE TDGIPCPHII HVMILEQLNR IPLNLIMKRW  360
TKNAKDDAPT VVDDNVDPKY QKMPRCLLDD NDVDVYERNK EVWPSQLGTL FGGDSSECET  420
SKARQQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017974464.1	1e-126	PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A061EDR8	0.0	A0A061EDR8_THECC; FAR1-related sequence 12-like protein
STRING	EOY03066	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-19	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Thecc1EG017493t1
Entrez Gene	18601217

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]