PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG017269t1

Common Name

TCM_017269

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GRAS

Protein Properties

Length: 655aa MW: 72461 Da PI: 5.9299

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG017269t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	433.6	1.5e-132	288	653	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykalppsetseknsseelaalklfsevsPi 90 lv+lLl+cAe+v+++d la++++ +l+ ++p gd+mqR+a++fteAL+arla + +++++a +p + ++ns e+l+++++ ++++P+ Thecc1EG017269t1 288 LVHLLLACAEVVAKEDYLLARKYIHHLNRVVTPLGDSMQRVASCFTEALSARLAAtitTNPGTSNAPKPFAPFPSNSLEVLKIYQIVYQACPY 380 68*************************************************99543457789999999999999************* PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183 +kf+h+taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+ s e ++etg+ L+++A++l++pfef++ + Thecc1EG017269t1 381 IKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPNGAPFLRITGVGP----SLEYIKETGRCLTELAHSLHIPFEFHP-IG 468 *******************************************************....9***********************.7 PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276 ++led+++++++ + gEalaVn v +lhr++ +l ++L ++++ P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a+++ Thecc1EG017269t1 469 EQLEDIKPHMFNRRVGEALAVNAVNRLHRVP--GNCLG----NLLAMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFS 555 ****************************9..44444....5********************************************** PP GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369 ++s +r+kvE+ ++++ei+n+vaceg+er++rhe+lekWr+ +e GFk vpls +a++q k ll ++ dgyr+ e++g+l+lgW+dr++++ Thecc1EG017269t1 556 PDSAQRAKVEQYIFAPEIRNIVACEGSERTARHERLEKWRKLMEGKGFKGVPLSANAVTQSKILLGLYSCDGYRLTEDKGCLLLGWQDRAILA 648 ***************************************************************************************** PP GRAS 370 vSaWr 374 +SaWr Thecc1EG017269t1 649 ASAWR 653 **8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.246	262	633	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.2E-130	288	653	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 655 aa Download sequence Send to blast
MMNSLCGSMG SIKSENSYES IAESKKTAPS SVLEQNNLTP PSLNFPVVKF ELDDVEVQSP 60 DSSAWETFFS DYFDSDAMIL SPVRNLPSPQ ISSYSFGNVQ AMQGQSLSGC SPPRFSSQLG 120 SFSSTHKGKG QSPLHKVFNS PNNQFMQVES LSLPAIEEFL DDYQKDGYGE YPTTRISGMG 180 TSNNMFEMPS TAPAMLDCIP IPNSSRFCGS ASETSSSAGC SQLTQEQHYP VNSVSRPPLS 240 QQLQQEKQLE KQQPAPTQQQ QQHQNLGHTF MVPIPISPEQ EQDSGLQLVH LLLACAEVVA 300 KEDYLLARKY IHHLNRVVTP LGDSMQRVAS CFTEALSARL AATITTNPGT SNAPKPFAPF 360 PSNSLEVLKI YQIVYQACPY IKFAHFTANQ AIFEAFEAEE RVHVIDLDIL QGYQWPAFMQ 420 ALAARPNGAP FLRITGVGPS LEYIKETGRC LTELAHSLHI PFEFHPIGEQ LEDIKPHMFN 480 RRVGEALAVN AVNRLHRVPG NCLGNLLAMI RDQAPNIVTL VEQEASHNGP YFLGRFLEAL 540 HYYSAIFDSL DATFSPDSAQ RAKVEQYIFA PEIRNIVACE GSERTARHER LEKWRKLMEG 600 KGFKGVPLSA NAVTQSKILL GLYSCDGYRL TEDKGCLLLG WQDRAILAAS AWRC*

Sequence ? help Back to Top

Protein Sequence Length: 655 aa Download sequence Send to blast

MMNSLCGSMG SIKSENSYES IAESKKTAPS SVLEQNNLTP PSLNFPVVKF ELDDVEVQSP  60
DSSAWETFFS DYFDSDAMIL SPVRNLPSPQ ISSYSFGNVQ AMQGQSLSGC SPPRFSSQLG  120
SFSSTHKGKG QSPLHKVFNS PNNQFMQVES LSLPAIEEFL DDYQKDGYGE YPTTRISGMG  180
TSNNMFEMPS TAPAMLDCIP IPNSSRFCGS ASETSSSAGC SQLTQEQHYP VNSVSRPPLS  240
QQLQQEKQLE KQQPAPTQQQ QQHQNLGHTF MVPIPISPEQ EQDSGLQLVH LLLACAEVVA  300
KEDYLLARKY IHHLNRVVTP LGDSMQRVAS CFTEALSARL AATITTNPGT SNAPKPFAPF  360
PSNSLEVLKI YQIVYQACPY IKFAHFTANQ AIFEAFEAEE RVHVIDLDIL QGYQWPAFMQ  420
ALAARPNGAP FLRITGVGPS LEYIKETGRC LTELAHSLHI PFEFHPIGEQ LEDIKPHMFN  480
RRVGEALAVN AVNRLHRVPG NCLGNLLAMI RDQAPNIVTL VEQEASHNGP YFLGRFLEAL  540
HYYSAIFDSL DATFSPDSAQ RAKVEQYIFA PEIRNIVACE GSERTARHER LEKWRKLMEG  600
KGFKGVPLSA NAVTQSKILL GLYSCDGYRL TEDKGCLLLG WQDRAILAAS AWRC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	8e-99	276	652	7	378	Protein SCARECROW
5b3h_A	7e-99	276	652	6	377	Protein SCARECROW
5b3h_D	7e-99	276	652	6	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269\|PubMed:23122845}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269\|PubMed:23122845}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017974451.1	0.0	PREDICTED: scarecrow-like protein 23
Swissprot	G7L166	0.0	RAM1_MEDTR; GRAS family protein RAM1
TrEMBL	A0A061ECZ9	0.0	A0A061ECZ9_THECC; GRAS family transcription factor
STRING	EOY02860	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16510	10	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	1e-101	RGA-like 1

Link Out ? help Back to Top
Phytozome	Thecc1EG017269t1
Entrez Gene	18601063

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Tang H, et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 2014. 15: p. 312 [PMID:24767513] Pecrix Y, et al. Whole-genome landscape of Medicago truncatula symbiotic genes. Nat Plants, 2018. 4(12): p. 1017-1025 [PMID:30397259]