![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG017029t1 | ||||||||
Common Name | TCM_017029 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | NF-X1 | ||||||||
Protein Properties | Length: 1088aa MW: 118447 Da PI: 7.896 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 23.3 | 1.3e-07 | 280 | 298 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C+ +CH GpC+pC+ Thecc1EG017029t1 280 CGRHRCELICHVGPCDPCQ 298 ******************6 PP | |||||||
2 | zf-NF-X1 | 18.8 | 3.5e-06 | 498 | 515 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H+C++lCH G CppC Thecc1EG017029t1 498 CGQHSCESLCHSGHCPPC 515 ****************** PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57850 | 4.59E-7 | 101 | 171 | No hit | No description |
PROSITE profile | PS50016 | 8.876 | 109 | 170 | IPR019787 | Zinc finger, PHD-finger |
PROSITE profile | PS50089 | 9.568 | 112 | 168 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS01359 | 0 | 112 | 167 | IPR019786 | Zinc finger, PHD-type, conserved site |
CDD | cd06008 | 3.01E-5 | 201 | 263 | No hit | No description |
SMART | SM00438 | 0.023 | 225 | 243 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 8.1 | 227 | 242 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 5.78E-12 | 270 | 318 | No hit | No description |
Pfam | PF01422 | 7.9E-6 | 280 | 297 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 9.4E-5 | 280 | 299 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.79E-7 | 334 | 377 | No hit | No description |
Pfam | PF01422 | 0.0078 | 344 | 361 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0021 | 344 | 363 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 6.61E-12 | 392 | 440 | No hit | No description |
SMART | SM00438 | 0.0019 | 402 | 421 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.002 | 404 | 420 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 18 | 460 | 470 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 230 | 460 | 494 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.06E-8 | 488 | 531 | No hit | No description |
Pfam | PF01422 | 5.8E-4 | 498 | 515 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 4.1E-4 | 498 | 517 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 4.30E-6 | 545 | 593 | No hit | No description |
Pfam | PF01422 | 22 | 555 | 572 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.036 | 555 | 573 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.026 | 608 | 623 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 2.1 | 608 | 638 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 2.22E-4 | 636 | 685 | No hit | No description |
Pfam | PF01422 | 12 | 640 | 666 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.081 | 647 | 668 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01424 | 2.8E-4 | 779 | 844 | IPR001374 | R3H domain |
Gene3D | G3DSA:3.30.70.330 | 5.7E-5 | 886 | 937 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1088 aa Download sequence Send to blast |
MSNSETMSFQ GRNRPRNPSQ STRQEWVPRG SSSTTTTVVS SSPGASNSTP IVNHTSTRND 60 NRNRQIGRST NHRRDKEKER SENHVVVKEI DPNLPQLVQE IQDKLIRSTV ECMICYDTVR 120 RSAPIWSCSS CYSIFHLNCI KKWARAPTSV DLVAEKNQGI NWRCPGCQFV QLTSSKEIRY 180 ICFCGKRTDP PSDLYLTPHS CGEPCGKPLE KVLGLGAGVM KDELCPHVCV LQCHPGPCPP 240 CKAFSPPRLC PCGKKVITTR CFDRQSVLTC GQCCDKLLEC GRHRCELICH VGPCDPCQVP 300 INAPCFCGKK VEAVICGDMA VKGEVKTEDG IFSCSSTCGN KLRCGNHNCA EICHPGHCGD 360 CELMPNKIKS CYCRKTSLQE QRQSCLDPIP TCSEVCEKFL PCEVHQCDQV CHSGDCPSCS 420 VVVTQKCQCG ATSRRVECYK TTLENERFTC DKPCGRKKNC GRHRCSERCC LLSNTNNLPS 480 GDWDPHFCQM ACGKKLRCGQ HSCESLCHSG HCPPCFETIF TDLTCACGRT SIPPPLPCGT 540 PPPSCQLPCS VPQACGHSSS HSCHFGDCPP CSVPVAKKCI GGHVVLRNIP CGSKDIRCNK 600 LCGKTRQCGL HACGRTCHPA PCDISSGSEP GIRISCGQTC GAPRRDCRHT CTAPCHPSAP 660 CPDVRCDFRV TIACSCSRIT ATVPCDAGGF TSSFNADTVY EASIIQKLPV ALQPVDSTGK 720 KIPLGQRKLM CDDECAKLER KRVLEDAFNI TPPNLDALHF GENSVTSELL SDLYRRDAKW 780 VLAIEERCKF LVLGKNRGTA TGLKVHVFCP MLKDKRDAVR IIAERWKLSV SAAGWEPKRF 840 VVVHVTPKSK PPPRILGVKG ATSIGALHPP VFDPLVDMDP RLVVSFLDLP READISALVL 900 RFGGECELVW LNDKNALAVF SDPARAATAM RRLDHGSVYY GVVIFVQNAG ASVASTANNA 960 WGGAGQNSAL KGNPWKKAVV EELGWREDSW GDEESFGGTS DLGSVWKGKE TPIAASINRW 1020 SVLDSETGVS SSSRTVQTED LSKPAGVLSN SGIDSNTAKS NSAGLSGGDF NEPEPLEVVD 1080 DWEKAYE* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007031673.2 | 0.0 | PREDICTED: NF-X1-type zinc finger protein NFXL1 | ||||
Refseq | XP_017975584.1 | 0.0 | PREDICTED: NF-X1-type zinc finger protein NFXL1 | ||||
Swissprot | Q9SY59 | 0.0 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | A0A061EDW4 | 0.0 | A0A061EDW4_THECC; NF-X-like 1 isoform 1 | ||||
STRING | EOY02600 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5955 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G10170.1 | 0.0 | NF-X-like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG017029t1 |
Entrez Gene | 18600889 |
Publications ? help Back to Top | |||
---|---|---|---|
|