PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG016792t3
Common NameTCM_016792
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family G2-like
Protein Properties Length: 447aa    MW: 48958.5 Da    PI: 7.9984
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG016792t3genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.83.2e-30269323255
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ.kYRl 55 
                       pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ +YR+
  Thecc1EG016792t3 269 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQqMYRT 323
                       9************************************************648997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.147265325IPR017930Myb domain
SuperFamilySSF466896.99E-14266323IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-26267323IPR009057Homeodomain-like
TIGRFAMsTIGR015578.0E-22269323IPR006447Myb domain, plants
PfamPF002495.9E-6270319IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009887Biological Processorgan morphogenesis
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010158Biological Processabaxial cell fate specification
GO:0010229Biological Processinflorescence development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MPLEGVFVEP SSNPIPDLSL HISPPKASTS MICSKSSEVI DTSFNLLSGH EVSKSNSGTS  60
MISDSQAYTE LSLARPHPAN VMEQERQCRR NSTGGAEQPS HTPLHLTHRH PHPTNTHLNH  120
INHGVSLLDV SNGARPIKGI PVYQNRSFPF PTLENLSRER DPKMCFYQIP YPSSSLYSSS  180
PSLSASPYFG GGLDPISILS SGSTQASPAY RSPATIRFNG ISKDAFKSHQ LHQQPQHSHY  240
GIGSSDTSNG LIRSRFLPKL PTKRSMRAPR MRWTSTLHAR FVHAVELLGG HERATPKSVL  300
ELMDVKDLTL AHVKSHLQQM YRTVKTTDKP AASSDGSGEE DISTAVSGSE RGLRGLTDQI  360
GTSDGSLQQE LDYPCNPTTT MWSNSSREAW LHANSNDIDG VRGPLSFQSN RTEESCDSTP  420
LLNCKNPSLE FTLGRPDWHG TQHKHT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-15270325458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-15270325458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-15270325357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-15270325357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-15270325357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-15270325357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-15270325458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-15270325458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-15270325458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-15270325458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-15270325458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-15270325458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017974327.10.0PREDICTED: transcription repressor KAN1 isoform X2
TrEMBLA0A061ECC10.0A0A061ECC1_THECC; KANADI like transcription factor, putative isoform 3
STRINGEOY022660.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.12e-83G2-like family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]