PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG016743t1

Common Name

TCM_016743

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Trihelix

Protein Properties

Length: 285aa MW: 33619.5 Da PI: 7.4328

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG016743t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	77.2	2.5e-24	24	105	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W +e+++Li +r e+e+++ ++k++k+lWe vs++mr+rg+ r+p qCk+kw+nl +ryk ++++ ++ +++p+f++l+ Thecc1EG016743t1 24 QWGPEETRELILIRGELERDFTAAKRNKTLWEIVSARMRDRGYIRTPDQCKCKWKNLLNRYKGKETSDPEN----GRQFPFFEELH 105 7************************************************************99999974....668****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.619	23	81	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	3.1E-4	23	83	IPR009057	Homeodomain-like
CDD	cd12203	4.18E-22	24	88	No hit	No description
Pfam	PF13837	4.0E-22	24	106	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MFGGGDSEGV GGRISSMLGG GGGQWGPEET RELILIRGEL ERDFTAAKRN KTLWEIVSAR 60 MRDRGYIRTP DQCKCKWKNL LNRYKGKETS DPENGRQFPF FEELHAVFTE RAKNMQRLLL 120 ESEAGSTQAK KRMRRISADR SSDEFSEEED DDEDESEEER HARSISSRKR KADRVVLDKS 180 PRPNSGTSST SSTGLQEMLR EFFQQQQRME MQWREMMERR ARERQLFEQE WRQSMEKLER 240 ERLMVEQAWR EREEQRRLRE ESRAERRDAL LTTLLNKLIN DNNL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ebi_A	4e-14	25	95	7	77	DNA binding protein GT-1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007040932.1	0.0	PREDICTED: trihelix transcription factor GT-3b
TrEMBL	A0A061G7N3	0.0	A0A061G7N3_THECC; Homeodomain-like superfamily protein
STRING	EOY25433	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17512	9	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	1e-30	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG016743t1
Entrez Gene	18606958

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]