PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

G2-like

Protein Properties

Length: 377aa MW: 42231.1 Da PI: 9.3768

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG016589t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102	3.8e-32	198	251	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Thecc1EG016589t1 198 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 251 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.97E-15	195	251	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-28	196	251	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-23	198	251	IPR006447	Myb domain, plants
Pfam	PF00249	2.5E-7	199	250	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MELFPAQPDL SLQISPPNSK PSSTWRRTEE DMDLGFWKRA LDSRNSVSSM AKTDNCFELS 60 LSNPRVSESN SNHLHLLQNG GANCNGNLFH TYHQNQFPHR HNQLQHPVLY QHQQQQQGLG 120 QELGFLRPIR GIPVYQNHPP PTPFPFAQQP LDSSLASSPS SLVTNNTSNT SLSPFQSQGL 180 MRSRFMSRFP AKRSMRAPRM RWTTTLHARF VHAVELLGGH ERATPKSVLE LMDVKDLTLA 240 HVKSHLQMYR TVKTTDRAAA SSGQSDAFEN GSSGDTSEDL MFDIQNPRRS EISVQQGRPS 300 SNAHQDKEYH GLWSNSSREA WLHGKPKDSA RNLPSLEKDM DPKCLSYERI SDVSSSSLSG 360 TSPKKPNLEF TLGVPH*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MELFPAQPDL SLQISPPNSK PSSTWRRTEE DMDLGFWKRA LDSRNSVSSM AKTDNCFELS  60
LSNPRVSESN SNHLHLLQNG GANCNGNLFH TYHQNQFPHR HNQLQHPVLY QHQQQQQGLG  120
QELGFLRPIR GIPVYQNHPP PTPFPFAQQP LDSSLASSPS SLVTNNTSNT SLSPFQSQGL  180
MRSRFMSRFP AKRSMRAPRM RWTTTLHARF VHAVELLGGH ERATPKSVLE LMDVKDLTLA  240
HVKSHLQMYR TVKTTDRAAA SSGQSDAFEN GSSGDTSEDL MFDIQNPRRS EISVQQGRPS  300
SNAHQDKEYH GLWSNSSREA WLHGKPKDSA RNLPSLEKDM DPKCLSYERI SDVSSSSLSG  360
TSPKKPNLEF TLGVPH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	199	253	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	199	253	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-16	199	253	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-16	199	253	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-16	199	253	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-16	199	253	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	199	253	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	199	253	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	199	253	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	199	253	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	199	253	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	199	253	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00174	DAP	Transfer from AT1G32240	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007040692.2	0.0	PREDICTED: probable transcription factor KAN2
Swissprot	Q9C616	1e-101	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A061G740	0.0	A0A061G740_THECC; Homeodomain-like superfamily protein isoform 1
STRING	EOY25194	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5387	28	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	1e-76	G2-like family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG016589t1
Entrez Gene	18606815

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]