PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Thecc1EG016519t1

Common Name

TCM_016519

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 334aa MW: 38800 Da PI: 5.1215

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG016519t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.6	5.9e-05	11	36	1	26
CHHHHHHHHHHHHHHHHHHHHHHHCT CS HLH 1 rrrahnerErrRRdriNsafeeLrel 26 +r a+ner+r+RR+ ++ fe+L+ + Thecc1EG016519t1 11 QRSAKNERDRQRRRGLKLEFERLQNV 36 799********************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MVQSRALSPA QRSAKNERDR QRRRGLKLEF ERLQNVAAKY QEMAPLLDEL RVEVTTVRNV 60 ISQLAEESRR LNDVEPHLTR KIHQLDNIVR QNQTEQIERR QLLSQWQFKT QAMVLPTIGK 120 EASNEPIDLG VESSRSDIWY TDEFLQDFIE KLDDKEKSRV DFLDFKGLPE ELEKCGRFSL 180 PPSLVPIHEI LDKAYGDITA ESNQSNPVIR DSYILFCSVI KEMNEVQLEQ VDLDKMILWR 240 DAINSGLSIG FRGNFAIEHL KKIARAYFGS KAWNDQELKS LEERMSELKA ELYGLEQQHY 300 SIIERQSSEM CRECLQDQQY FQGKPLSTGL FLS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	18	23	DRQRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007040603.2	0.0	PREDICTED: uncharacterized protein LOC18606755
TrEMBL	A0A061GDI7	0.0	A0A061GDI7_THECC; Fiber protein Fb17
STRING	EOY25104	0.0	(Theobroma cacao)

Link Out ? help Back to Top
Phytozome	Thecc1EG016519t1
Entrez Gene	18606755

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]