PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG016198t1
Common NameTCM_016198
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family HSF
Protein Properties Length: 315aa    MW: 34666.6 Da    PI: 4.5008
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG016198t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.95e-36281182101
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d+++++lisw+++g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k ll
  Thecc1EG016198t1  28 FLTKTYQLVDDPSVDDLISWNDDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFRRGEKGLL 111
                       9*****************************************************************99.........**************** PP

                       XXXXXXX CS
      HSF_DNA-bind  95 ekikrkk 101
                       ++i+r+k
  Thecc1EG016198t1 112 RDIQRRK 118
                       *****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.7E-3818111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.6E-5924117IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.44E-3625117IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.5E-212851IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.3E-3228117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-216678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-217991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MAPLPADQPC ESPTSAASDS QRSLPTPFLT KTYQLVDDPS VDDLISWNDD GSTFIVWRPA  60
EFARDLLPKY FKHNNFSSFV RQLNTYGFRK VVPDRWEFAN DCFRRGEKGL LRDIQRRKIT  120
PAAAAASATV TVAAVPCKVS PSNSDEQVIS SNSPPVVAVV HRTTSCTTTP ELLEENERLR  180
KENMQLNHEL TQLKGLCNNI LTLMTNYASG QLENPSNLAE GKALDLLPAR NSAGTAEDGG  240
SKGAMAMEEE ADDVTPKLFG VSIGVKRLRR EEDDEEQNNN QVQQQDIEPG SEVKAEPLDG  300
KTDDQDTAWL ELGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-271311715129Heat shock factor protein 1
5d5v_B5e-271311715129Heat shock factor protein 1
5d5v_D5e-271311715129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017973125.10.0PREDICTED: heat stress transcription factor B-2b
SwissprotQ9T0D31e-106HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A061G6800.0A0A061G680_THECC; Winged-helix DNA-binding transcription factor family protein, putative isoform 1
STRINGEOY246520.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.13e-94HSF family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]