PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GRAS

Protein Properties

Length: 796aa MW: 87113.4 Da PI: 5.9876

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG015991t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	329.1	8.4e-101	434	794	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 +lL+++Ae v +g++ aq +Larl+++ sp g+p+qR+a+yf+eAL+ l ++ ++ p ++ ++ +++ ++ a+k+fsevsP+++f + Thecc1EG015991t1 434 DLLYQAAELVGTGNFLHAQGILARLNHQLSPVGKPLQRAAFYFKEALQLLLIM--NNPVSPPPLRSPTPFDVIFKMGAYKVFSEVSPLIQFVN 524 79**********************************************998..5556677777777888****************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188 +t+Nqa+lea++ ++r+Hi+Dfdi+ G+QW++++q+L R++g+pslRiT+++sp++++ el ++e+L +fA+e+gv+fe +vl + l++ Thecc1EG015991t1 525 FTCNQALLEALDDADRIHIVDFDIGFGAQWASFMQELPMRSRGAPSLRITAFASPSTHHPIELGLMRENLMQFANEIGVNFELEVLNFDCLDQ 617 *********************************************************************************97777766 PP GRAS 189 l..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 +l ++r +++Ea+aVn+ + + +++ +l++ +L++vk+lsPk++v ++ d+n+ +F +++++a++ y lf+sl+a +s Thecc1EG015991t1 618 TpySLPMFRSNENEAVAVNFPV--WSSSNQPSALPN----LLRFVKQLSPKIMVSLDRGGDRNDLPFPQHIIHAFQSYINLFESLDAV-NVTS 703 555677889999****99..444455666666....******************************************665.579 PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372 ++ +k+E++l+ ++i++ v + + e++ Wr +++aGF+pv++s+++++qa++++++ +++g+rve++++slvl+W + L+svSa Thecc1EG015991t1 704 DAVNKIEKFLFVPRIESTVLGRLHA----PEKMPLWRTLFSSAGFSPVTFSNFTETQAECVVKRAQVRGFRVEKRQASLVLCWLQGDLISVSA 792 *****************998887....9************************************************************* PP GRAS 373 Wr 374 Wr Thecc1EG015991t1 793 WR 794 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	46.749	406	774	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.9E-98	434	794	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 796 aa Download sequence Send to blast
MHFQLQAKGA VELAGFASIC QQDKWIKQQE ANSFSFANSF YYNNEQEPTS VLHMRRSQSP 60 PTSASTLSSS FNGGAAGAGG GGNSTDNTTT TAATIAPPET SLPNNNKEEW ATELQPIPSE 120 LDLVPGPGGG QRCNLGLEDW ETMLSESAVS PSQDHSFLGW ITGDVNDPSF GLKQLLQSGS 180 TGPNPGLDFE GNAGLGVVDQ GPGFDPIGSL NSSGPGNVIS SAAPNLGGFP GSGFLPNTSN 240 NGNGKIGSVM PSSSSVGVVN NHKVLGASVG LNTNIQNPVF TSPANNIGLP VSLPMLYQQQ 300 QQGQYVESQE EKPQILNAQV LMVQQQHPQN PNFFLPLPQE HHLLQPLPKR LNPGNLELSS 360 QIPKLQFSDA GHELFMRKQQ QQHMGFPHGV QFVPQQKPLM VAKQKVLGPG EEMAQQQQQH 420 QYQLHQQQQT TLFDLLYQAA ELVGTGNFLH AQGILARLNH QLSPVGKPLQ RAAFYFKEAL 480 QLLLIMNNPV SPPPLRSPTP FDVIFKMGAY KVFSEVSPLI QFVNFTCNQA LLEALDDADR 540 IHIVDFDIGF GAQWASFMQE LPMRSRGAPS LRITAFASPS THHPIELGLM RENLMQFANE 600 IGVNFELEVL NFDCLDQTPY SLPMFRSNEN EAVAVNFPVW SSSNQPSALP NLLRFVKQLS 660 PKIMVSLDRG GDRNDLPFPQ HIIHAFQSYI NLFESLDAVN VTSDAVNKIE KFLFVPRIES 720 TVLGRLHAPE KMPLWRTLFS SAGFSPVTFS NFTETQAECV VKRAQVRGFR VEKRQASLVL 780 CWLQGDLISV SAWRC*

Sequence ? help Back to Top

Protein Sequence Length: 796 aa Download sequence Send to blast

MHFQLQAKGA VELAGFASIC QQDKWIKQQE ANSFSFANSF YYNNEQEPTS VLHMRRSQSP  60
PTSASTLSSS FNGGAAGAGG GGNSTDNTTT TAATIAPPET SLPNNNKEEW ATELQPIPSE  120
LDLVPGPGGG QRCNLGLEDW ETMLSESAVS PSQDHSFLGW ITGDVNDPSF GLKQLLQSGS  180
TGPNPGLDFE GNAGLGVVDQ GPGFDPIGSL NSSGPGNVIS SAAPNLGGFP GSGFLPNTSN  240
NGNGKIGSVM PSSSSVGVVN NHKVLGASVG LNTNIQNPVF TSPANNIGLP VSLPMLYQQQ  300
QQGQYVESQE EKPQILNAQV LMVQQQHPQN PNFFLPLPQE HHLLQPLPKR LNPGNLELSS  360
QIPKLQFSDA GHELFMRKQQ QQHMGFPHGV QFVPQQKPLM VAKQKVLGPG EEMAQQQQQH  420
QYQLHQQQQT TLFDLLYQAA ELVGTGNFLH AQGILARLNH QLSPVGKPLQ RAAFYFKEAL  480
QLLLIMNNPV SPPPLRSPTP FDVIFKMGAY KVFSEVSPLI QFVNFTCNQA LLEALDDADR  540
IHIVDFDIGF GAQWASFMQE LPMRSRGAPS LRITAFASPS THHPIELGLM RENLMQFANE  600
IGVNFELEVL NFDCLDQTPY SLPMFRSNEN EAVAVNFPVW SSSNQPSALP NLLRFVKQLS  660
PKIMVSLDRG GDRNDLPFPQ HIIHAFQSYI NLFESLDAVN VTSDAVNKIE KFLFVPRIES  720
TVLGRLHAPE KMPLWRTLFS SAGFSPVTFS NFTETQAECV VKRAQVRGFR VEKRQASLVL  780
CWLQGDLISV SAWRC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-34	451	794	22	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017973382.1	0.0	PREDICTED: scarecrow-like protein 22
TrEMBL	A0A061GBD8	0.0	A0A061GBD8_THECC; GRAS family transcription factor
STRING	EOY24374	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16534	8	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-116	GRAS family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG015991t1
Entrez Gene	18606281

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]