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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Thecc1EG015960t1 |
| Common Name | TCM_015960 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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| Family |
C2H2 |
| Protein Properties |
Length: 326aa MW: 35950.3 Da PI: 8.155 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thecc1EG015960t1 | genome | CGD | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 15.4 | 5.3e-05 | 216 | 238 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C++C+k+F++ ++L H r++
Thecc1EG015960t1 216 YRCGNCKKVFRSYDTLDEHKRVC 238
9********************95 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00355 | 0.12 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 10.762 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 1.4E-5 | 4 | 27 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 4.44E-7 | 216 | 283 | No hit | No description |
| PROSITE profile | PS50157 | 9.452 | 216 | 243 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 16 | 216 | 236 | IPR015880 | Zinc finger, C2H2-like |
| Pfam | PF13912 | 9.2E-4 | 216 | 236 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 9.349 | 261 | 283 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.17 | 261 | 283 | IPR015880 | Zinc finger, C2H2-like |
| Pfam | PF13912 | 1.5E-10 | 261 | 283 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 263 | 283 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 326 aa
Download sequence Send
to blast |
MEKHKCKLCA RTFSNGRALG GHMKGHLATH PLPPKTTQHQ LGDRAESASS SSSSSGEEQE 60
LQEEKSREVV EEKSLVYGLR ENPRKSFRFA DPEFSFAVDS GSVVQDRESE TESRNPTRRR 120
SKRNRQVGTN ITTDEIKKPK LLRKPSLVES PTEPEPVSSV SDTSPEEDVA MCLMLLSRDV 180
WKTKNAEQKS VELLEESEEI DLNNKSELSK KIRGKYRCGN CKKVFRSYDT LDEHKRVCCE 240
TKNAGKVAAA AAVVVANNKI FQCPFCYRVF GSGQALGGHK RSHLLAAASS SNAAAANSTK 300
FDNKLIDLNL PAPSEDDEFS VVSDA*
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