PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG015930t1 | ||||||||
Common Name | TCM_015930 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ERF | ||||||||
Protein Properties | Length: 238aa MW: 26529.6 Da PI: 5.4007 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.2 | 4e-18 | 59 | 108 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a++ ++g Thecc1EG015930t1 59 TYRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALTIKG 108 69****998.**********843...6**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.7E-37 | 59 | 122 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-32 | 59 | 117 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-22 | 59 | 116 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.7E-12 | 59 | 108 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.565 | 59 | 116 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.4E-11 | 60 | 71 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.82E-33 | 60 | 117 | No hit | No description |
PRINTS | PR00367 | 9.4E-11 | 82 | 98 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MEVPLFAEFE TQSSASSSSS PLASESSTRF KSKKVEKVKN ANESKRKVKN DEVEGKHPTY 60 RGVRMRQWGK WVSEIREPRK KSRIWLGTFP TAEMAARAHD VAALTIKGKS AYLNFPEIAH 120 ELPRPVSASP KDIQAAAAKA ATLNYPKSHE VEAELSQVDQ MFPRSPASTV TSHDTQDSSS 180 SPLINNDDAF IDLPDLLLDM NHQIDEFWGS LSWQLPATDD PVENGFGYEE PCLWEYC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-18 | 53 | 116 | 8 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00292 | DAP | Transfer from AT2G35700 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007039780.2 | 1e-176 | PREDICTED: ethylene-responsive transcription factor ERF039 | ||||
Swissprot | Q9ZQP3 | 3e-56 | ERF38_ARATH; Ethylene-responsive transcription factor ERF038 | ||||
TrEMBL | A0A061G3Z0 | 1e-176 | A0A061G3Z0_THECC; Integrase-type DNA-binding superfamily protein, putative | ||||
STRING | EOY24281 | 1e-176 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM185 | 28 | 283 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35700.1 | 7e-58 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG015930t1 |
Entrez Gene | 18606227 |
Publications ? help Back to Top | |||
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