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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG015895t2 | ||||||||
Common Name | TCM_015895 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | RAV | ||||||||
Protein Properties | Length: 314aa MW: 35750.6 Da PI: 9.8709 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 29.4 | 2e-09 | 33 | 81 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV + +W A+I ++ ++lg++ +eeAa a+++a++kl+ Thecc1EG015895t2 33 SRFRGVLALN-NSKWGARISLK-----YRAYWLGTYQVEEEAAIAYDRAALKLHR 81 6788885444.78*****9993.....5*************************95 PP | |||||||
2 | B3 | 52.3 | 1e-16 | 152 | 244 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f k+lt+ dv + + + +pk++a ++ g+ + s++lt++d+ r W+++++y+ + +++++tkGW++Fv n+L+ D+++ + Thecc1EG015895t2 152 FHKKLTQTDVAQIKGFHIPKEYALQYlpplgnssdgGQMRNDSVDLTFYDKFYRPWTFRYSYWCTTKTFLFTKGWRHFVAMNNLNIADTIMVY 244 89****************************9999985555699**********************************************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.15E-15 | 33 | 91 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 15.198 | 34 | 89 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-13 | 34 | 89 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-8 | 34 | 95 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.42E-14 | 37 | 90 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-21 | 145 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.62E-18 | 150 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.15E-15 | 151 | 244 | No hit | No description |
Pfam | PF02362 | 2.3E-13 | 152 | 244 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-5 | 152 | 266 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.56 | 152 | 266 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MVGSSNSNKI IPCRRNSQYR MRSSCSSGRM SSSRFRGVLA LNNSKWGARI SLKYRAYWLG 60 TYQVEEEAAI AYDRAALKLH RSDSPLNFPW KIYTAQEKLF QSSYSNEEIM SMIKDKTYTS 120 NLTSFLARES LVRRSMSGCL INAKGISHQL LFHKKLTQTD VAQIKGFHIP KEYALQYLPP 180 LGNSSDGGQM RNDSVDLTFY DKFYRPWTFR YSYWCTTKTF LFTKGWRHFV AMNNLNIADT 240 IMVYGCAFVE EGQSRNFYMI DIHRNDAANY IVGRDAEQGI GTQPNIVDNG AHVDGISGVE 300 RKNGVKLFGI QIA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017973293.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120 isoform X1 | ||||
TrEMBL | A0A061G322 | 0.0 | A0A061G322_THECC; DNA-binding protein RAV1, putative isoform 2 | ||||
STRING | EOY24230 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20740 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50680.1 | 2e-51 | RAV family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG015895t2 |
Entrez Gene | 18606197 |
Publications ? help Back to Top | |||
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