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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG015895t1 | ||||||||
Common Name | TCM_015895 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | RAV | ||||||||
Protein Properties | Length: 294aa MW: 33458 Da PI: 9.651 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 29.5 | 1.8e-09 | 13 | 61 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV + +W A+I ++ ++lg++ +eeAa a+++a++kl+ Thecc1EG015895t1 13 SRFRGVLALN-NSKWGARISLK-----YRAYWLGTYQVEEEAAIAYDRAALKLHR 61 6788885444.78*****9993.....5*************************95 PP | |||||||
2 | B3 | 52.5 | 8.9e-17 | 132 | 224 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f k+lt+ dv + + + +pk++a ++ g+ + s++lt++d+ r W+++++y+ + +++++tkGW++Fv n+L+ D+++ + Thecc1EG015895t1 132 FHKKLTQTDVAQIKGFHIPKEYALQYlpplgnssdgGQMRNDSVDLTFYDKFYRPWTFRYSYWCTTKTFLFTKGWRHFVAMNNLNIADTIMVY 224 89****************************9999985555699**********************************************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.85E-15 | 13 | 71 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.8E-8 | 14 | 75 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-13 | 14 | 69 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.198 | 14 | 69 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.27E-14 | 17 | 70 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-21 | 125 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.22E-18 | 130 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.62E-15 | 131 | 224 | No hit | No description |
PROSITE profile | PS50863 | 10.56 | 132 | 246 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-5 | 132 | 246 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-13 | 132 | 224 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MRSSCSSGRM SSSRFRGVLA LNNSKWGARI SLKYRAYWLG TYQVEEEAAI AYDRAALKLH 60 RSDSPLNFPW KIYTAQEKLF QSSYSNEEIM SMIKDKTYTS NLTSFLARES LVRRSMSGCL 120 INAKGISHQL LFHKKLTQTD VAQIKGFHIP KEYALQYLPP LGNSSDGGQM RNDSVDLTFY 180 DKFYRPWTFR YSYWCTTKTF LFTKGWRHFV AMNNLNIADT IMVYGCAFVE EGQSRNFYMI 240 DIHRNDAANY IVGRDAEQGI GTQPNIVDNG AHVDGISGVE RKNGVKLFGI QIA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007039728.2 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120 isoform X2 | ||||
Refseq | XP_017973293.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120 isoform X1 | ||||
Refseq | XP_017973294.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120 isoform X2 | ||||
TrEMBL | A0A061G322 | 0.0 | A0A061G322_THECC; DNA-binding protein RAV1, putative isoform 2 | ||||
TrEMBL | A0A061GB32 | 0.0 | A0A061GB32_THECC; DNA-binding protein RAV1, putative isoform 1 | ||||
STRING | EOY24230 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50680.1 | 2e-52 | RAV family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG015895t1 |
Entrez Gene | 18606197 |
Publications ? help Back to Top | |||
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