PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG015727t1
Common NameTCM_015727
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 251aa    MW: 27149 Da    PI: 5.2301
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG015727t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000127496123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C+ C + F++   L  H+++H
  Thecc1EG015727t1 74 YTCTFCRREFRSAQALGGHMNVH 96
                      9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.79E-671101No hitNo description
PROSITE profilePS5015711.15774101IPR007087Zinc finger, C2H2
SMARTSM003550.00667496IPR015880Zinc finger, C2H2-like
PfamPF139121.9E-57497IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MAAELGLLSL NQLQKLAQSQ QNQIQLQPNP SLAAASWMWN PKAQPQEDDD SWEVRAFAED  60
TGNIMGTTWP PRSYTCTFCR REFRSAQALG GHMNVHRRDR ARLHQTQPSG AINPTSSSST  120
TSSSTVLIPT QEFGTNGGLC LLYQLPNPNG VFTSPPMNAC SNDSPSTLLS ISPYPSNNLM  180
EAPSLNFPVT PQGLNNSSSL CYSSKAEPST QTSADNCINN IGNSSSNNCK ETSIEELDLE  240
LRLGHRPTTS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-136996229superman protein
2l1o_A2e-136996229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972715.10.0PREDICTED: transcriptional regulator SUPERMAN
TrEMBLA0A061G4960.0A0A061G496_THECC; Palmate-like pentafoliata 1 transcription factor
STRINGEOY240170.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52842647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.15e-42C2H2 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]