PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

HD-ZIP

Protein Properties

Length: 239aa MW: 27405.3 Da PI: 5.7003

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG015645t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.2	3.3e-19	38	92	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++f++eq++ Le +Fe+ + p ++++ LA++lgL+ rq+ +WFqNrRa+ k Thecc1EG015645t1 38 KNKRRFSDEQIRSLEFMFESGSRPESQKKQLLANELGLQPRQIAIWFQNRRARSK 92 67789************************************************99 PP
2	HD-ZIP_I/II	114.6	6e-37	39	130	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +krr+s+eq+++LE +Fe+ ++ e+++K+ la+eLglqprq+a+WFqnrRAR k+kq+E+dy+ Lk++ydal+++ e+L++e+++Lr +l++ Thecc1EG015645t1 39 NKRRFSDEQIRSLEFMFESGSRPESQKKQLLANELGLQPRQIAIWFQNRRARSKSKQIERDYNILKESYDALASSYESLKRENQSLRIQLQK 130 79*************************************************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.84E-18	25	95	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-17	27	92	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.961	34	94	IPR001356	Homeobox domain
SMART	SM00389	1.4E-16	37	98	IPR001356	Homeobox domain
CDD	cd00086	1.39E-15	38	95	No hit	No description
Pfam	PF00046	1.4E-16	38	92	IPR001356	Homeobox domain
PRINTS	PR00031	7.0E-5	65	74	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	69	92	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.0E-5	74	90	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.3E-18	94	135	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MLARKEQHQA AATVKVEVGL SGLDLHDHPI TNIKPSSKNK RRFSDEQIRS LEFMFESGSR 60 PESQKKQLLA NELGLQPRQI AIWFQNRRAR SKSKQIERDY NILKESYDAL ASSYESLKRE 120 NQSLRIQLQK LKGQLEMEHG NKTHEPNRTG NSGDGNSENK SVICDANEKI TFLFEGYDHM 180 ISSDNNSRDA ESRDEDRVVL DMMEATDGSL TSSEKWCGFE SNCFLDESSC SSNWWEYW*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	94	RRARSKSKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007039388.2	1e-176	PREDICTED: homeobox-leucine zipper protein ATHB-12
TrEMBL	A0A061GA10	1e-177	A0A061GA10_THECC; Homeobox 7, putative
STRING	EOY23889	1e-178	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18057	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	3e-43	homeobox 7

Link Out ? help Back to Top
Phytozome	Thecc1EG015645t1
Entrez Gene	18605974

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]