PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG015563t2
Common NameTCM_015563
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family Trihelix
Protein Properties Length: 706aa    MW: 75899.5 Da    PI: 8.3409
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG015563t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix971.7e-3098182187
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                       rW++qe+laL+++r++m+ ++r++  k+plWe+vs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++f+qlea
  Thecc1EG015563t2  98 RWPRQETLALLKIRSDMDAAFRDATVKGPLWEDVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YKFFSQLEA 182
                       8*********************************************************************866665..*******85 PP
2trihelix1101.4e-34531616187
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                       rW+k evlaLi++r+ +e+r++++  k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf+ql+a
  Thecc1EG015563t2 531 RWPKAEVLALINLRSGLESRYQEAGPKGPLWEEISAGMSRMGYKRSAKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHQLDA 616
                       8*********************************************************************8.99999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.006495157IPR001005SANT/Myb domain
CDDcd122031.27E-2797162No hitNo description
PROSITE profilePS500906.59797155IPR017877Myb-like domain
PfamPF138375.4E-2197183No hitNo description
PROSITE profilePS500906.806524588IPR017877Myb-like domain
SMARTSM007170.023528590IPR001005SANT/Myb domain
CDDcd122031.93E-31530595No hitNo description
PfamPF138376.9E-24530617No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009414Biological Processresponse to water deprivation
GO:0010090Biological Processtrichome morphogenesis
GO:0030308Biological Processnegative regulation of cell growth
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:2000038Biological Processregulation of stomatal complex development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MQQGGGEGGG GHQSQYGEMG APTTAVATTT GAVSSSHMVS EQSEQLVEAA SPISSRPPAT  60
GNLDEFMRLA SGGGDDGGDE GDRAGGGGGG AGVASGNRWP RQETLALLKI RSDMDAAFRD  120
ATVKGPLWED VSRKLAELGY KRSAKKCKEK FENVHKYYKR TKEGRAGRQD GKSYKFFSQL  180
EALHTTSSAT AAANLSTPVT PVTAASTASL DVAPVSVGVH MPISSVRIPP ATIPMSSSML  240
AMPGSAPASV PVPPVGAAPA SGHPITTTAA PFGISFSSNS SSSSQGFEDD DDDDDEEDEP  300
GGEPSNMAGT SRKRKRQSSR GGGSTTRRMM EFFEGLMKQV MQKQESMQQR FLEAIEKREQ  360
DRMIREEAWK RQEMARLTRD HELMAHERAI AASRDAAIIS FLQKITGQTV QLPTTVTVSA  420
APPPPTQPAV PVVPPPASIP TAASPLHHPP SLPQQQRSSQ QQQQSVQPHH QHQQQPQAVH  480
QQQHQAQPQN TEVVRHHQQP ISSDVVMAIP EQQVPPQEIG RSGNLEPASS RWPKAEVLAL  540
INLRSGLESR YQEAGPKGPL WEEISAGMSR MGYKRSAKRC KEKWENINKY FKKVKESNKK  600
RPEDAKTCPY FHQLDALHRK KILGGGTSGG FSSFSDQNRP QEETSQQHLD TSEAPPITAA  660
PQSTQPTDQS ENKTGATADV LTRKEGLPGS FCGEGNGEAA KKKTL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140148KRSAKKCKE
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds specific DNA sequence such as GT3 box 5'-GGTAAA-3' in the SDD1 promoter. Negative regulator of water use efficiency (WUE) via the promotion of stomatal density and distribution by the transcription repression of SDD1. Regulates the expression of several cell cycle genes and endoreduplication, especially in trichomes where it prevents ploidy-dependent plant cell growth. {ECO:0000269|PubMed:19717615, ECO:0000269|PubMed:21169508}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by water stress. {ECO:0000269|PubMed:21169508}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007039269.20.0PREDICTED: trihelix transcription factor GTL1 isoform X2
SwissprotQ9C8826e-82GTL1_ARATH; Trihelix transcription factor GTL1
TrEMBLA0A061G1Q90.0A0A061G1Q9_THECC; Duplicated homeodomain-like superfamily protein, putative isoform 2
STRINGEOY237690.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-47Trihelix family protein
Publications ? help Back to Top
  1. Caro E,Desvoyes B,Gutierrez C
    GTL1 keeps cell growth and nuclear ploidy under control.
    EMBO J., 2012. 31(24): p. 4483-5
    [PMID:23188085]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Zheng X, et al.
    The Wheat GT Factor TaGT2L1D Negatively Regulates Drought Tolerance and Plant Development.
    Sci Rep, 2016. 6: p. 27042
    [PMID:27245096]
  4. Shibata M, et al.
    GTL1 and DF1 regulate root hair growth through transcriptional repression of ROOT HAIR DEFECTIVE 6-LIKE 4 in Arabidopsis.
    Development, 2018.
    [PMID:29439132]