PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG015497t1

Common Name

TCM_015497

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GRF

Protein Properties

Length: 578aa MW: 61780.9 Da PI: 8.5464

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG015497t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.8	1.1e-24	200	242	2	44
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 epgrCrRtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e Thecc1EG015497t1 200 LEPGRCRRTDGKKWRCSRDVAPDQKYCERHMHRGRPRSRKPVE 242 69**************************************987 PP
2	QLQ	54.6	3.3e-19	138	172	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FT+aQ+ +L++Q++++Ky+ a++PvPp+Ll +i+ Thecc1EG015497t1 138 PFTNAQWKELERQAMIFKYMKASVPVPPDLLIPIT 172 8********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	4.4E-12	137	173	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	6.2E-14	138	171	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.273	138	173	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.803	199	243	IPR014977	WRC domain
Pfam	PF08879	8.2E-21	201	242	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010114	Biological Process	response to red light
GO:0010218	Biological Process	response to far red light
GO:0080167	Biological Process	response to karrikin
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence Send to blast
MNMAGYSVSD KATNESSSIE AVDLGVKLQS SKLLLPGKMM MVHHDNHHRP FPPYAICYGD 60 VDADGPTGNN NKPKTSNIYD VFQSSDSGAA AVAVAAIASG GAVGVRTLQR FDIAPTTPFA 120 AHTAFKSPGG MAASLEFPFT NAQWKELERQ AMIFKYMKAS VPVPPDLLIP ITGSASVPAA 180 SNSALGGGAL NLRFSSRGDL EPGRCRRTDG KKWRCSRDVA PDQKYCERHM HRGRPRSRKP 240 VELPNKKTRY THTQALPSTA STILTKNASP SQFLGTLAQP FRQNQTTFFL DKPSEKAATF 300 WPVASVSSYK EPRNSDWIVS EELIPLASSD QRWHYLMQTV PTSARSFSNA DNSSVLNQNY 360 NKEPLNLNSY ANFNATEDQQ SNRCPLFLNS EIVPLEKSPE IAARGFIDAW STGVSENRNA 420 NSGTETSVSF NGKFSLSSLS LSMGVTDIRD DEMAPIHMGL GVTESDQNHE YASKSHLSSW 480 LGPASWAAST PGGPLAEVLR PSKIASAVAT TEGSSNSSSP VTGNGNSCSP PVTAVSSPSG 540 VLQRTLASFS DSSGSSSPTL ASSGAKPEIG SMWLKGN*

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence Send to blast

MNMAGYSVSD KATNESSSIE AVDLGVKLQS SKLLLPGKMM MVHHDNHHRP FPPYAICYGD  60
VDADGPTGNN NKPKTSNIYD VFQSSDSGAA AVAVAAIASG GAVGVRTLQR FDIAPTTPFA  120
AHTAFKSPGG MAASLEFPFT NAQWKELERQ AMIFKYMKAS VPVPPDLLIP ITGSASVPAA  180
SNSALGGGAL NLRFSSRGDL EPGRCRRTDG KKWRCSRDVA PDQKYCERHM HRGRPRSRKP  240
VELPNKKTRY THTQALPSTA STILTKNASP SQFLGTLAQP FRQNQTTFFL DKPSEKAATF  300
WPVASVSSYK EPRNSDWIVS EELIPLASSD QRWHYLMQTV PTSARSFSNA DNSSVLNQNY  360
NKEPLNLNSY ANFNATEDQQ SNRCPLFLNS EIVPLEKSPE IAARGFIDAW STGVSENRNA  420
NSGTETSVSF NGKFSLSSLS LSMGVTDIRD DEMAPIHMGL GVTESDQNHE YASKSHLSSW  480
LGPASWAAST PGGPLAEVLR PSKIASAVAT TEGSSNSSSP VTGNGNSCSP PVTAVSSPSG  540
VLQRTLASFS DSSGSSSPTL ASSGAKPEIG SMWLKGN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU735532	6e-58	EU735532.1 Gossypium arboreum small heat shock protein gene, promoter region and partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007039182.2	0.0	PREDICTED: growth-regulating factor 7
TrEMBL	A0A061G2T9	0.0	A0A061G2T9_THECC; Growth-regulating factor 7, putative isoform 1
STRING	EOY23683	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12106	27	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53660.1	4e-37	growth-regulating factor 7

Link Out ? help Back to Top
Phytozome	Thecc1EG015497t1
Entrez Gene	18605846

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]